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Final output file size 0 #22
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Could you try to decrease the minimum translated ORF length with the Update: I tried it out locally, the We should handle this case somehow better :/ By the way, if you want a set of stickers (see https://twitter.com/thesteinegger/status/1201076220957315074), send me your address to milot at mirdita de. |
thank you so much for the quick response! I'll give this a try and report back. Just saw your update -- thank you for testing this out! @luizirber received two sticker sets and gave one to me since he knows I'm a plass enthusiast. Thank you! |
Expected Behavior
I expect plass to output a fasta with amino acid sequences
Current Behavior
plass runs, but outputs a file with no amino acid sequences
Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.
Plass Output (for bugs)
Log file: 11388349399477705273_log.txt
File sizes in
tmp
for plass run:11388349399477705273_file_sizes.txt
Context
I am assembling reads that I think are derived from a single organism from a metagenome (e.g. reads from a spacegraphcats query). The reads are 101 bases long. The read file is 2.2GB, and I am treating it as single end.
Your Environment
I ran plass using conda, with the following environment:
I am on a linux computer, and used plass with 128 gb of ram and 8 CPU (Ubuntu 18.04.4 LTS (GNU/Linux 4.15.0-70-generic x86_64))
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