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Some Issues about the length of protein sequences #31
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The The parameter you want is probably No idea about the super long proteins though. Could you post the sequences? |
Thank you for your reply. |
Hi there,
Here I'd like to thanks for this excellent tool for assemble short read sequencing data on a protein level, it improved the utilization of reads to a large extent.
When I used the plass assemble , some question puzzled me. Firstly, when I used the --min-length to control the length of residues of output. Unfortunatly the output is empty, despite the value is 100. Then, when I checked the length of output, I found that the length of many residue larger than 5000 residues, which seems abnormal. How can we prevent this from happening?
The command I used to assemble as follows:
plass assemble --threads 32 --min-seq-id 0.99 clean_reads/ERR_YZYC_1.fastq clean_reads/ERR_YZYC_2.fastq ERR_YZYC_assembly.fas ERR_YZYCt
Plass Version: c4aaa98
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