-
Notifications
You must be signed in to change notification settings - Fork 0
/
config
22 lines (18 loc) · 579 Bytes
/
config
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
##
## Config
##
## All the paths must have quotation marks and without a "/" at the end
## Conda environment (DO NOT CHANGE!)
conda_env="/srv/data/tools/public_envs/FBI_virulencefinder"
## Program option
## 0 = both run_virulencefinder and run_serotypefinder on fastas
## 1 = run_virulencefinder on fastas
## 2 = run_serotypefinder on fastas
## 3 = run_virulencefinder on raw reads
program=0
## Minimum coverage and identity used in SerotypeFinder
sero_min_cov=0.60
sero_min_id=0.80
## Minimum coverage and identity used in VirulenceFinder
viru_min_cov=0.60
viru_min_id=0.99