diff --git a/bifrost_chewbbaca/pipeline.smk b/bifrost_chewbbaca/pipeline.smk index 0dde834..19bb4b7 100755 --- a/bifrost_chewbbaca/pipeline.smk +++ b/bifrost_chewbbaca/pipeline.smk @@ -129,7 +129,7 @@ rule blast_gene_call: chewbbaca_blastdb = f"{os.environ['BIFROST_CG_MLST_DIR']}/blastdb/", output: gene_call_results = directory(f"{component['name']}/blast_gene_call_results"), - gene_calls = gene_call_results+f"/{sample_name}.fa" + gene_calls = f"{component['name']}/blast_gene_call_results/{sample_name}.fa", gene_call_done = f"{component['name']}/blast_gene_call_done" script: os.path.join(os.path.dirname(workflow.snakefile), "rule__blast_genecall.py")