Repository for the SCAT code from Wasser et al
If you download this code, please take a moment to "star" the repo (click star). This will let me know that someone is interested in using the code, which will allow me to prioritize development. If no-one stars it I'll assume no-one finds it useful :).
Major revisions were released July 29, 2021.
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C++ software by M Stephens. Current maintenance by Mary Kuhner (mkkuhner@uw.edu).
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Current version is version 3.0.2 (SCAT3)
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C++ code is in src/
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Revised manual is docs/manual.pdf; a list of changes is in this document.
##Compile
cd src/
make
##Run on example data
cd src/
./SCAT3 ../docs/test.genotype.txt ../docs/test.location.txt . 2