From 7ae3713bed67efb75edb05a0cefb3518ee0f9698 Mon Sep 17 00:00:00 2001
From: katieb1 <birchardkatie@gmail.com>
Date: Sun, 13 Oct 2024 16:36:22 -0700
Subject: [PATCH] Add R-CMD-check to github workflows

---
 .github/workflows/R-CMD-check.yml | 91 +++++++++++++++++++++++++++++++
 .gitignore                        |  2 +-
 2 files changed, 92 insertions(+), 1 deletion(-)
 create mode 100644 .github/workflows/R-CMD-check.yml

diff --git a/.github/workflows/R-CMD-check.yml b/.github/workflows/R-CMD-check.yml
new file mode 100644
index 00000000..92cfcb1a
--- /dev/null
+++ b/.github/workflows/R-CMD-check.yml
@@ -0,0 +1,91 @@
+on: [push, pull_request]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    
+    # From r-lib/actions
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    strategy: 
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          - {os: windows-latest, r: 'devel'}
+          # - {os: macOS-latest, r: 'release'}
+          # - {os: macOS-latest, r: 'devel'}
+          - {os: ubuntu-latest, r: 'release'} # r-lib/actions not supported  # r-lib/actions not supported (setup-r OS)
+          - {os: ubuntu-latest, r: 'devel'} # r-lib/actions not supported  # r-lib/actions not supported (setup-r OS)
+          # - {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
+          # - {os: ubuntu-16.04, r: 'devel', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}  # r-lib/actions not supported (setup-r R version)
+          # - {os: ubuntu-18.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/bionic/latest"}
+          #- {os: ubuntu-18.04, r: 'devel', cran: "https://demo.rstudiopm.com/all/__linux__/bionic/latest"} # r-lib/actions not supported (setup-r R versin)
+    
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      _R_CHECK_DONTTEST_EXAMPLES_: false
+      RSPM: ${{ matrix.config.rspm }}
+    
+    steps:
+      - uses: actions/checkout@v3
+        
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+      - uses: r-lib/actions/setup-pandoc@v2
+      
+      - uses: r-lib/actions/setup-tinytex@v2
+        if: runner.os != 'Windows'
+      
+      - name: Install GDAL + qpdf / Linux
+        if: runner.os == 'Linux'
+        run: |
+          sudo apt-get install libgdal-dev
+          sudo apt-get install qpdf
+          
+      - name: Install GDAL + qpdf / Mac OS
+        if: runner.os == 'macOS'
+        run: |
+          brew install gdal 
+          brew install qpdf
+          
+      # From r-lib/actions
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v3
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
+          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
+          
+      - name: Install dependencies
+        run: |
+          install.packages(c("remotes", "rcmdcheck"))
+          remotes::install_deps(dependencies = TRUE)
+        shell: Rscript {0}
+        
+      - name: Check
+        env: 
+          NOT_CRAN: true
+        continue-on-error: true
+        run: |
+          install.packages("https://cran.r-project.org/src/contrib/Archive/curl/curl_4.3.2.tar.gz", repos=NULL, type="source")
+          rcmdcheck::rcmdcheck(build_args = c("--no-manual", "--no-build-vignettes"), args = c("--no-manual", "--ignore-vignettes"), error_on = "error")
+        shell: Rscript {0}
+        
+      - name: Check as CRAN
+        env: 
+          NOT_CRAN: false
+        run: |
+          install.packages("https://cran.r-project.org/src/contrib/Archive/curl/curl_4.3.2.tar.gz", repos=NULL, type="source")
+          rcmdcheck::rcmdcheck(build_args = c("--no-manual", "--no-build-vignettes"), args = c("--no-manual", "--ignore-vignettes", "--as-cran"), error_on = "error")
+        shell: Rscript {0}
+        
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check
diff --git a/.gitignore b/.gitignore
index 3a90ca95..2481baca 100644
--- a/.gitignore
+++ b/.gitignore
@@ -24,5 +24,5 @@ rsyncrosim.Rcheck
 debugging.R
 binaries/
 # Don't build R-CMD-check (broken)
-**/R-CMD-check.yml
+#**/R-CMD-check.yml
 # tests_in_progress/