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slurm
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slurm
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#!/bin/sh
#SBATCH --job-name=SIMPA # job name
#SBATCH -p <PARTITION> # partition
#SBATCH -A <ACCOUNT> # the users account
#SBATCH --time=01:30:00 # time
#SBATCH --error=./%A.err # error file name
#SBATCH --output=./%A.out # output file name
#SBATCH -N 4 # using 4 nodes
#SBATCH -n 160 # expecting 40 cores per node
#SBATCH --mem-per-cpu=1GB # memory allocated for job: 160 * 1GB
# load an installed Open MPI
module load mpi/OpenMPI/3.1.4-GCC-8.3.0
# running the example provided in the repositiory
srun --unbuffered -n 160 --mpi=pmi2 python SIMPA.py --bed ./scExamples/H3K4me3_hg38_5kb/BC8791969.bed --targets H3K4me3