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cluster.json
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cluster.json
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{
"__default__": {
"time" : "4:00:00",
"n" : 1,
"mem" : 4,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"qc_atropos": {
"time" : "4:00:00",
"n" : 8,
"mem" : 8,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"qc_filter": {
"time" : "4:00:00",
"n" : 4,
"mem" : 8,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"assemble_megahit": {
"time" : "12:00:00",
"n" : 8,
"mem" : 120,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"assemble_metaspades": {
"time" : "48:00:00",
"n" : 8,
"mem" : 240,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"assemble_metaquast": {
"time" : "8:00:00",
"n" : 8,
"mem" : 32,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"map_bowtie2_index": {
"time" : "2:00:00",
"n" : 2,
"mem" : 4,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"map_bowtie2": {
"time" : "8:00:00",
"n" : 4,
"mem" : 8,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"bin_run_maxbin": {
"time" : "8:00:00",
"n" : 8,
"mem" : 16,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"bin_make_cov_files": {
"time" : "8:00:00",
"n" : 12,
"mem" : 12,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"tar_bin_cov_files": {
"time" : "1:00:00",
"n" : 1,
"mem" : 2,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"anvi_run_hmms": {
"time" : "8:00:00",
"n": 8,
"mem": 16,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"anvi_run_centrifuge": {
"time" : "4:00:00",
"n": 8,
"mem": 32,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"anvi_profile": {
"time" : "8:00:00",
"n": 4,
"mem": 16,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"anvi_merge": {
"time" : "8:00:00",
"n": 4,
"mem": 16,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"anvi_summarize": {
"time" : "24:00:00",
"n": 4,
"mem": 16,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"tax_metaphlan2": {
"time": "8:00:00",
"n": 4,
"mem": 32,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"tax_kraken": {
"time": "8:00:00",
"n": 12,
"mem": 120,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"tax_kraken_combine_reports": {
"time": "2:00:00",
"n": 4,
"mem": 80,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"tax_shogun": {
"time": "12:00:00",
"n": 12,
"mem": 80,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
},
"function_humann2": {
"time": "8:00:00",
"n": 8,
"mem": 32,
"output" : "cluster_logs/{rule}.{wildcards}.out",
"error" : "cluster_logs/{rule}.{wildcards}.err"
}
}