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What method was used in the paper to convert the predictions into valid pairs? #34
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Hi @rebeccaronai , I'll describe the main idea here:
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I saw in the paper it states that "we converted the predicted matrix back to valid pairs by merging predictions to chromosomes and counting the discretized intensity value." I also saw that someone raised the issue and it was closed stating it takes a lot of effort. I am wondering if you can specify what method was used in the paper so that it can be replicated by others and FitHiC can be used for loop calling?
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