{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":678866730,"defaultBranch":"main","name":"mribrew","ownerLogin":"teanijarv","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-08-15T15:08:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/24492129?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1692112101.0","currentOid":""},"activityList":{"items":[{"before":"0f1c2e37e4addcb4cf01021a14102754d1cf8bdc","after":"77c7fbed2aed1745388fcaf82bf05d331e427b02","ref":"refs/heads/main","pushedAt":"2024-09-03T13:38:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"tractseg all subs","shortMessageHtmlLink":"tractseg all subs"}},{"before":"f6128bfc997740ccec4d6c8bd6877b7ea10382f7","after":"0f1c2e37e4addcb4cf01021a14102754d1cf8bdc","ref":"refs/heads/main","pushedAt":"2024-09-03T13:37:00.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/teanijarv/mribrew","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/teanijarv/mribrew"}},{"before":"a548fc97b15c3de6cdcea3fcfdaa9281b3d4009c","after":"f6128bfc997740ccec4d6c8bd6877b7ea10382f7","ref":"refs/heads/main","pushedAt":"2024-08-29T11:19:19.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/teanijarv/mribrew","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/teanijarv/mribrew"}},{"before":"03653987d68ef32399762da36c343e27e56e3a85","after":"a548fc97b15c3de6cdcea3fcfdaa9281b3d4009c","ref":"refs/heads/main","pushedAt":"2024-08-21T13:37:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"ACT update + tractseg initial script","shortMessageHtmlLink":"ACT update + tractseg initial script"}},{"before":"ec846b3bafd70807affadf230a27a82c5e66fcd1","after":"03653987d68ef32399762da36c343e27e56e3a85","ref":"refs/heads/main","pushedAt":"2024-05-30T11:14:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"DK atlas edit + partial correlations","shortMessageHtmlLink":"DK atlas edit + partial correlations"}},{"before":"c67fc2b6956f07783520e8d9e8bdf9e344b4f852","after":"ec846b3bafd70807affadf230a27a82c5e66fcd1","ref":"refs/heads/main","pushedAt":"2024-05-28T08:15:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"changes in ACT script + FC script and functions","shortMessageHtmlLink":"changes in ACT script + FC script and functions"}},{"before":"dd84d7d3f5566b0490c1dfa1178b281e1a1af5a6","after":"c67fc2b6956f07783520e8d9e8bdf9e344b4f852","ref":"refs/heads/main","pushedAt":"2024-04-02T14:22:14.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/teanijarv/mribrew","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/teanijarv/mribrew"}},{"before":"caf4c04867a9e519949a5244716288f0e93a4c7d","after":"dd84d7d3f5566b0490c1dfa1178b281e1a1af5a6","ref":"refs/heads/main","pushedAt":"2024-04-02T14:17:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"- average healthy controls response function used for the full sample","shortMessageHtmlLink":"- average healthy controls response function used for the full sample"}},{"before":"cf86f17008360d46fec4fb8ac0d36a0e6036f70d","after":"caf4c04867a9e519949a5244716288f0e93a4c7d","ref":"refs/heads/main","pushedAt":"2024-03-22T16:40:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update mribrew_dwi_processing_l.py\n\n- added check for both PA and AP file presence in processing script","shortMessageHtmlLink":"Update mribrew_dwi_processing_l.py"}},{"before":"b3cfa0730f1e2838a34387179cf800c2f9ccb243","after":"cf86f17008360d46fec4fb8ac0d36a0e6036f70d","ref":"refs/heads/main","pushedAt":"2024-03-22T14:31:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Delete this_is_where_dwi_data_goes.rtf","shortMessageHtmlLink":"Delete this_is_where_dwi_data_goes.rtf"}},{"before":"d82b313befd17b4cd0425a1f12d4610f9eb9f5ab","after":"b3cfa0730f1e2838a34387179cf800c2f9ccb243","ref":"refs/heads/main","pushedAt":"2024-03-22T14:31:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"fetch fs data + act pipeline for longitudinal and cross-sectional data\n\n- fetch freesurfer data corresponding to the subjects and their scans and organise to repository\n- act pipeline for longitudinal data (didnt yet delete x-sectional, but would like to only include long. in the future)","shortMessageHtmlLink":"fetch fs data + act pipeline for longitudinal and cross-sectional data"}},{"before":"2b52ceff613561d43b4aedac7b6b7438031eab3d","after":"d82b313befd17b4cd0425a1f12d4610f9eb9f5ab","ref":"refs/heads/main","pushedAt":"2024-03-22T14:28:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"dcm2nifti fixes","shortMessageHtmlLink":"dcm2nifti fixes"}},{"before":"90c0a92690ba3eadbb7353ffc1a196d73c5d3408","after":"2b52ceff613561d43b4aedac7b6b7438031eab3d","ref":"refs/heads/main","pushedAt":"2024-03-22T08:19:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"longitudinal data processing update","shortMessageHtmlLink":"longitudinal data processing update"}},{"before":"466a35f9ec672a54ccea9a3b4b4dd6590b78c91c","after":"90c0a92690ba3eadbb7353ffc1a196d73c5d3408","ref":"refs/heads/main","pushedAt":"2024-03-21T07:54:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/teanijarv/mribrew","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/teanijarv/mribrew"}},{"before":"cb5cd7ec2505fee68d0c142921846be09bbeb366","after":"466a35f9ec672a54ccea9a3b4b4dd6590b78c91c","ref":"refs/heads/main","pushedAt":"2024-03-04T15:30:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5206aee0f5e40e9103fa7c6ab9de4af0ba48a436","after":"cb5cd7ec2505fee68d0c142921846be09bbeb366","ref":"refs/heads/main","pushedAt":"2024-03-04T15:27:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"dcm2nifti script + act update + other","shortMessageHtmlLink":"dcm2nifti script + act update + other"}},{"before":"da0321665e3ec46e528ac99cb77a8d167757ec00","after":"5206aee0f5e40e9103fa7c6ab9de4af0ba48a436","ref":"refs/heads/main","pushedAt":"2024-02-22T10:09:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Create mribrew_dwi_act.py\n\n- implementation of Anatomically Constrained Tractography (ACT)","shortMessageHtmlLink":"Create mribrew_dwi_act.py"}},{"before":"7efab01081bab8634e0921141e1fc36c4c24a002","after":"da0321665e3ec46e528ac99cb77a8d167757ec00","ref":"refs/heads/main","pushedAt":"2024-02-19T10:31:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"fix dwi preprocessing function\n\n- fix in combining dwi brain masks","shortMessageHtmlLink":"fix dwi preprocessing function"}},{"before":"a9460689a7e436015c1c24bcc86ca37ff22e24de","after":"7efab01081bab8634e0921141e1fc36c4c24a002","ref":"refs/heads/main","pushedAt":"2023-11-06T15:00:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"RSfMRI correlation matrix extraction + NBS scripts\n\n- pipeline for extracting correlation matrices using Schaefer and DK atlases in parallel\n- script for running NBS analysis","shortMessageHtmlLink":"RSfMRI correlation matrix extraction + NBS scripts"}},{"before":"c1e427fc585d2953a2f2eedc4f07f71d289ffa99","after":"a9460689a7e436015c1c24bcc86ca37ff22e24de","ref":"refs/heads/main","pushedAt":"2023-10-09T13:28:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"optimise RSfMRI time series extraction function","shortMessageHtmlLink":"optimise RSfMRI time series extraction function"}},{"before":"5df5ed4b960810cfe29d2925d1f57971ba6bf851","after":"c1e427fc585d2953a2f2eedc4f07f71d289ffa99","ref":"refs/heads/main","pushedAt":"2023-09-29T11:49:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"7d29cbe6c3377939ad267cb2c9f5a6c2917fc95d","after":"5df5ed4b960810cfe29d2925d1f57971ba6bf851","ref":"refs/heads/main","pushedAt":"2023-09-29T11:45:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"RSfMRI EBM multi-atlas script creation","shortMessageHtmlLink":"RSfMRI EBM multi-atlas script creation"}},{"before":"6782aa315c38db865d0c925c408abab6334a1210","after":"7d29cbe6c3377939ad267cb2c9f5a6c2917fc95d","ref":"refs/heads/main","pushedAt":"2023-09-06T13:24:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"RSfMRI connectivity pipeline initial script + mri data restructure script\n\n- data restructure python script to reorganise the data\n- rsfmri connectivity script (first version) for calculating connectivity between regions involved within different ebm stages","shortMessageHtmlLink":"RSfMRI connectivity pipeline initial script + mri data restructure sc…"}},{"before":"07a3ad444d96d8e329b49ee4a2a236414a927f82","after":"6782aa315c38db865d0c925c408abab6334a1210","ref":"refs/heads/main","pushedAt":"2023-08-29T07:24:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"checkDimension fix + readme dependencies update","shortMessageHtmlLink":"checkDimension fix + readme dependencies update"}},{"before":"e18ac6dc44813ac5a143bffcc199398e33f4649a","after":"07a3ad444d96d8e329b49ee4a2a236414a927f82","ref":"refs/heads/main","pushedAt":"2023-08-25T13:16:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a9b292c1c6c996ee1272d130483bb0725ad1b4ff","after":"e18ac6dc44813ac5a143bffcc199398e33f4649a","ref":"refs/heads/main","pushedAt":"2023-08-25T13:09:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"dwi pre-processing (wip) + mapmri multiprocessing update\n\n- dwi pre-processing pipeline creation; still work-in-progress though as eddy not working fully on some machines\n- added more variables to define mapmri multiprocessing (had some crashes with large datasets)","shortMessageHtmlLink":"dwi pre-processing (wip) + mapmri multiprocessing update"}},{"before":"5eca28c69b802c5ff9337c8ff874092d40f023b3","after":"a9b292c1c6c996ee1272d130483bb0725ad1b4ff","ref":"refs/heads/main","pushedAt":"2023-08-18T15:08:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update mribrew_mapmri.py\n\n- added an option to change the number of threads","shortMessageHtmlLink":"Update mribrew_mapmri.py"}},{"before":"0271bc57d6ebcca0666cbb4f13c956c2f00e5414","after":"5eca28c69b802c5ff9337c8ff874092d40f023b3","ref":"refs/heads/main","pushedAt":"2023-08-18T13:03:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"926a0908dfc145b414d5c403de2c64541f146655","after":"0271bc57d6ebcca0666cbb4f13c956c2f00e5414","ref":"refs/heads/main","pushedAt":"2023-08-18T13:01:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"nipype integration for mapmri\n\n- total restructure of the mapmri script with possibility to run parallel computing","shortMessageHtmlLink":"nipype integration for mapmri"}},{"before":"00ab1be595702231b1855a11b1946f0ab670b193","after":"926a0908dfc145b414d5c403de2c64541f146655","ref":"refs/heads/main","pushedAt":"2023-08-17T16:29:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"teanijarv","name":"Toomas Erik Anijärv","path":"/teanijarv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24492129?s=80&v=4"},"commit":{"message":"restructure to support parallel computing via nipype\n\n- still experimental and in testing\n(commit only for backup)","shortMessageHtmlLink":"restructure to support parallel computing via nipype"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEq6AwRgA","startCursor":null,"endCursor":null}},"title":"Activity · teanijarv/mribrew"}