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DESCRIPTION
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DESCRIPTION
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Package: chromatoplots
Title: Preprocessing of GC-MS metabolomics data with a GUI and interactive plots.
Version: 0.0.9
Author: Michael Lawrence, Tengfei Yin, Heike Hofmann, Suh-yeon Choi, Dianne Cook
Depends: methods, commandr
Imports: Biobase, IRanges, xcms
Description: Provides a GUI-driven extensible pipeline-based framework for the
preprocessing of chromatography - mass spectrometry data with a strong
emphasis on the use of interactive graphics for algorithm diagnostics.
The default pipeline is designed for GC-MS metabolomics data, but most
routines are likely applicable to other types of data. The pipeline may be
controlled from the command line or the GUI.
Maintainer: Tengfei Yin <yintengfei@gmail.com>
License: Artistic-2.0
biocViews: Visualization,MassSpectrometry
collate: chromatoplots-package.r
load-pipes.R
cpSample-class.R
cpPeaks-class.R
cpExperiment-class.R
all-utils.R
canonical.R
onestep.R
genProfile-pipes.R
removeBaseline-alg.R
removeBaseline-pipes.R
findPeaks-alg.R
findPeaks-pipes.R
findComps-alg.R
findComps-pipes.R
groupComps-alg.R
groupComps-pipes.R
rtcor-alg.R
rtcor-pipes.R
summarize-alg.R
summarize-pipes.R
normalize-alg.R
normalize-pipes.R
fillPeaks-pipes.R
filtComps-alg.R
identify-pipes.R
filtPeaks.R
deconvolution.R
gutter.R
output.R
cplot.R
graphics.R
extra.R
gui.R
postprocessing.R
zzz.R