DESCRIPTION

Package: baytrends
Type: Package
Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized 
    Additive Modeling (GAM) approach. The model development includes selecting a 
    GAM structure to describe nonlinear seasonally-varying changes over time, 
    incorporation of hydrologic variability via either a river flow or salinity, 
    the use of an intervention to deal with method or laboratory changes 
    suspected to impact data values, and representation of left- and 
    interval-censored data. The approach has been applied to water quality data 
    in the Chesapeake Bay, a major estuary on the east coast of the United 
    States to provide insights to a range of management- and research-focused 
    questions.  Methodology described in Murphy (2019) 
    <doi:10.1016/j.envsoft.2019.03.027>.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Version: 2.0.12
Maintainer: Erik W Leppo <Erik.Leppo@tetratech.com>
Depends:
    R (>= 3.5.0)
License: GPL-3    
LazyData: TRUE
RoxygenNote: 7.3.2
Encoding: UTF-8
Imports:
    dataRetrieval,
    digest,
    dplyr,
    fitdistrplus,
    grDevices,
    lubridate,
    knitr,
    memoise,
    mgcv,
    pander,
    plyr,
    readxl,
    sessioninfo,
    survival
Suggests:
    devtools, 
    imputeTS,
    markdown,
    nlme,
    rmarkdown,
    testthat
URL: https://github.com/tetratech/baytrends,
    https://tetratech.github.io/baytrends/
BugReports: https://github.com/tetratech/baytrends/issues
VignetteBuilder: knitr
Collate: analysisOrganizeData.R
     appendDateFeatures.R
     baytrends.R
     checkRange.R
     chkParameter.R
     closeOut.R
     createResiduals.R
     data.R
     detrended.flow.R
     detrended.salinity.R
     expectMaxFunctions.r
     findFile.R
     flwAveragePred.R
     fmtPval.R
     gamDiff.R
     gamPlotCalc.r
     gamPlotDisp.R
     gamPlotDispSeason.R
     gamTables.R
     gamTest.r
     gamTestSeason.r
     getUSGSflow.R
     headers2.R
     imputeCensored.R
     initializeResults.r
     layerAggregation.R
     loadData.R
     loadExcel.R
     loadModels.R
     loadModelsResid.R
     makeSurvDF.R
     mergeFlow.R
     mergeSalinity.R
     reAttDF.R
     saveDF.R
     seasAdjflow2.R
     selectData.R
     smwrBase_baseDay.R
     smwrBase_baseDay2decimal.R
     smwrBase_dectime.R
     smwrBase_dectime2Date.R
     smwrBase_eventProcessing.R
     smwrBase_fillMissing.R
     smwrBase_na2miss.R
     supportFunctions.R
     unSurv.R
     gdata_nobs.R
     zzz.R