diff --git a/DESCRIPTION b/DESCRIPTION index e920a3d..096662d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: grur Type: Package Title: Imputations of RADseq data -Version: 0.1.0 -Date: 2019-03-15 +Version: 0.1.1 +Date: 2019-05-01 Encoding: UTF-8 Authors@R: c( person("Thierry", "Gosselin", email = "thierrygosselin@icloud.com", role = c("aut", "cre")), diff --git a/NEWS.md b/NEWS.md index bd428bf..7cd6671 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,13 @@ +# grur 0.1.1 2019-05-01 + +* pkgdown website +* better function doc +* vignettes +* work on dependencies +* work on travis CI + + + # grur 0.1.0 2019-03-15 * several commits will come with this in the next 2 weeks diff --git a/README.Rmd b/README.Rmd index f97d506..83d3c06 100644 --- a/README.Rmd +++ b/README.Rmd @@ -1,25 +1,15 @@ --- -output: - md_document: - variant: markdown_github +output: github_document --- - - -```{r setup, include = FALSE} -knitr::opts_chunk$set( - collapse = TRUE, - comment = "#>", - fig.path = "README-" -) -``` - # grur - ```{r, echo = FALSE} description <- readLines("DESCRIPTION") rvers <- stringr::str_match(grep("R \\(", description, value = TRUE), "[0-9]{1,4}\\.[0-9]{1,4}\\.[0-9]{1,4}")[1,1] version <- gsub(" ", "", gsub("Version:", "", grep("Version:", description, value = TRUE))) ``` + + + [![lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://tidyverse.org/lifecycle/#experimental) [![Travis-CI Build Status](https://travis-ci.org/thierrygosselin/grur.svg?branch=master)](https://travis-ci.org/thierrygosselin/grur) [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/grur)](http://cran.r-project.org/package=grur) @@ -28,7 +18,14 @@ version <- gsub(" ", "", gsub("Version:", "", grep("Version:", description, valu [![packageversion](https://img.shields.io/badge/Package%20version-`r version`-orange.svg)](commits/master) [![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-brightgreen.svg)](/commits/master) ---- + +```{r setup, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + fig.path = "README-" +) +``` https://thierrygosselin.github.io/grur/ diff --git a/README.md b/README.md index 6a313b8..9ba048a 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,5 @@ - -grur -===================================================== +# grur @@ -14,12 +12,12 @@ state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![DOI](https://zenodo.org/badge/87596763.svg)](https://zenodo.org/badge/latestdoi/87596763) [![packageversion](https://img.shields.io/badge/Package%20version-0.1.0-orange.svg)](commits/master) -[![Last-changedate](https://img.shields.io/badge/last%20change-2019--04--30-brightgreen.svg)](/commits/master) - — +[![Last-changedate](https://img.shields.io/badge/last%20change-2019--05--01-brightgreen.svg)](/commits/master) + -https://thierrygosselin.github.io/grur/ + -The name **grur** \|ɡro͞oˈr\| was chosen because the missing genotypes +The name **grur** |ɡro͞oˈr| was chosen because the missing genotypes dilemma with RADseq data reminds me of the cheese paradox. Here, I don’t want to sustain a @@ -37,8 +35,7 @@ Use **grur** to **visualize patterns of missingness** and **perform map-independent imputations of missing genotypes** (see [features](https://github.com/thierrygosselin/grur#features) below). -Installation ------------- +## Installation ``` r if (!require("remotes")) install.packages("remotes") @@ -48,32 +45,30 @@ library(grur) Note: not all the packages used inside **grur** are installed, why? -- Depending on your analysis, you might not need to install all of + - Depending on your analysis, you might not need to install all of them, by default, you’ll be able to run `grur::missing_visualization`. -- Some modules used for imputations are more complicated to install, + - Some modules used for imputations are more complicated to install, and might impact your choice of imputations. -- [this section covers all the required packages + - [this section covers all the required packages installation](https://thierrygosselin.github.io/grur/index.html#options-and-required-packages) -web site and additional info : ------------------------------------------------------------------------- +## web site and additional info : -- [Computer setup - installation - + - [Computer setup - installation - troubleshooting](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) -- [Function’s + - [Function’s documentation](http://thierrygosselin.github.io/grur/reference/index.html) -- [grur’s + - [grur’s features](https://thierrygosselin.github.io/grur/index.html#features) -- [Vignettes](http://thierrygosselin.github.io/grur/articles/index.html) -- How to cite grur: inside R type `citation("grur")` + - [Vignettes](http://thierrygosselin.github.io/grur/articles/index.html) + - How to cite grur: inside R type `citation("grur")` -Assumptions before imputing your dataset ----------------------------------------- +## Assumptions before imputing your dataset 1. **Filtered data**: Please don’t try **grur** with raw data consisting of \> 100K SNPs, you will generate all sorts of bias and - you’ll be disapointed. **Filter your data first!** + you’ll be disapointed. **Filter your data first\!** [radiator](https://thierrygosselin.github.io/radiator/) was designed for this. @@ -98,10 +93,9 @@ Assumptions before imputing your dataset arguments inside grur’s imputation module. 5. **Default arguments**: Defaults are there for testing, please, - please, please, don’t use grur’s defaults for publications! + please, please, don’t use grur’s defaults for publications\! -Life cycle ----------- +## Life cycle **grur** is still experimental, in order to make the package better, changes are inevitable. Experimental functions will change, argument @@ -109,16 +103,15 @@ names will change. Your codes and workflows might break from time to time **until grur is stable**. Consequently, depending on your tolerance to change, **grur** might not be for you. -- Philosophy, major changes and deprecated functions/arguments are + - Philosophy, major changes and deprecated functions/arguments are documented in life cycle section of functions. -- [changelog, versions, new features and bug + - [changelog, versions, new features and bug history](https://thierrygosselin.github.io/grur/news/index.html) -- [issues](https://github.com/thierrygosselin/grur/issues/new/choose) + - [issues](https://github.com/thierrygosselin/grur/issues/new/choose) and [contributions](https://github.com/thierrygosselin/grur/issues/new/choose) -Options and required packages ------------------------------ +## Options and required packages Please follow additional instructions in the [vignette](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) @@ -126,51 +119,20 @@ to install the required packages for the imputation options you want to conduct: | imputation options | package | install instructions | -|:-----------------------------------|:-----------------:|---------------------------------------------------------------------------------------------| -| **imputation.method = “lightgbm”** | `lightgbm` | [vignette](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) | +| :--------------------------------- | :---------------: | ------------------------------------------------------------------------------------------- | +| **imputation.method = “lightgbm”** | `lightgbm` | [vignette](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) | | **imputation.method = “xgboost”** | `xgboost` | [vignette](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) | | **imputation.method = “rf”** | `randomForestSRC` | [vignette](http://thierrygosselin.github.io/grur/articles/rad_genomics_computer_setup.html) | -| **imputation.method = “rf\_pred”** | `ranger` | `install.packages("ranger")` | -| **if using pmm \> 0** | `missRanger` | `install.packages("missRanger")` | - -Features --------- - - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
CaracteristicsDescription
Simulate RADseq datasimulate_rad: simulate populations of RADseq data following island or stepping stone models. Inside the function, allele frequency can be created with fastsimcoal2 and then used inside rmetasim simulation engine. Vignette coming soon.
Patterns of missingnessmissing_visualization: visualize patterns of missing data associated with different variables of your study (lanes, chips, sequencers, populations, sample sites, reads/samples, homozygosity, etc). Similar to PLINK’s identify-by-missingness analysis (IBM), grur is more powerful because it generates more analysis and automatically creates tables and figures (see vignette).

generate_missing: allows to generate missing genotypes in dateset [simulated] based on a compound Dirichlet-multinomial distribution. Vignette coming soon.
Imputationsgrur_imputations: Map-independent imputations of missing genotypes with several algorithms (including machine leaning):
* Random Forests (on-the-fly-imputations with randomForestSRC or using predictive modelling using ranger and missRanger),
* Extreme Gradient Tree Boosting (using XGBoost or LightGBM),
* Bayesian PCA (using bpca in pcaMethods),
* Classic Strawman: the most frequently observed, non-missing, genotypes is used for imputation.

Hierarchy: algorithm’s model can account for strata groupings, e.g. if patterns of missingness is found in the data.

Haplotypes: automatically detect SNPs on the same LOCUS (read/haplotype) to impute the SNPs jointly, reducing imputation artifacts. Vignette coming soon.
Input/Outputgrur uses radiator input and output modules. Check out the overview of supported file format.
ggplot2-based plottingVisualization: publication-ready figures of important metrics and statistics.
ParallelCodes designed and optimized for fast computations with, sometimes, progress bars. Works with all OS: Linux, Mac and yes PC!
+| **imputation.method = “rf\_pred”** | `ranger` | `install.packages("ranger")` | +| **if using pmm \> 0** | `missRanger` | `install.packages("missRanger")` | + +## Features + +| Caracteristics | Description | +| :----------------------------------------------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | +| **Simulate RADseq data** | `simulate_rad`: simulate populations of RADseq data following island or stepping stone models. Inside the function, allele frequency can be created with [fastsimcoal2](http://cmpg.unibe.ch/software/fastsimcoal2/) and then used inside [rmetasim](https://github.com/stranda/rmetasim) simulation engine. *Vignette coming soon*. | +| **Patterns of missingness** | `missing_visualization`: visualize patterns of missing data associated with different variables of your study (lanes, chips, sequencers, populations, sample sites, reads/samples, homozygosity, etc). Similar to PLINK’s identify-by-missingness analysis (IBM), **grur** is more powerful because it generates more analysis and automatically creates tables and figures ([see vignette](https://thierrygosselin.github.io/grur/articles/vignette_missing_data_analysis.html)).

`generate_missing`: allows to generate missing genotypes in dateset \[simulated\] based on a compound Dirichlet-multinomial distribution. *Vignette coming soon*. | +| **Imputations** | `grur_imputations`: **Map-independent** imputations of missing genotypes with several algorithms (including machine leaning):
\* **Random Forests** (on-the-fly-imputations with randomForestSRC or using predictive modelling using ranger and missRanger),
\* **Extreme Gradient Tree Boosting** (using XGBoost or LightGBM),
\* **Bayesian PCA** (using bpca in pcaMethods),
\* **Classic Strawman: ** the most frequently observed, non-missing, genotypes is used for imputation.

**Hierarchy: ** algorithm’s model can account for *strata* groupings, e.g. if patterns of missingness is found in the data.

**Haplotypes: ** automatically detect SNPs on the same LOCUS (read/haplotype) to impute the SNPs jointly, reducing imputation artifacts. *Vignette coming soon*. | +| **Input/Output** | **grur** uses [radiator](https://thierrygosselin.github.io/radiator/index.html) input and output modules. Check out the [overview](https://thierrygosselin.github.io/radiator/articles/get_started.html#overview) of supported file format. | +| **[ggplot2](http://ggplot2.org)-based plotting** | Visualization: publication-ready figures of important metrics and statistics. | +| **Parallel** | Codes designed and optimized for fast computations with, sometimes, progress bars. Works with all OS: Linux, Mac and yes PC\! | diff --git a/docs/articles/index.html b/docs/articles/index.html index c31560d..2925617 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -63,7 +63,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/articles/rad_genomics_computer_setup.html b/docs/articles/rad_genomics_computer_setup.html index c68e5b1..583efc6 100644 --- a/docs/articles/rad_genomics_computer_setup.html +++ b/docs/articles/rad_genomics_computer_setup.html @@ -31,7 +31,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/articles/vignette_missing_data_analysis.html b/docs/articles/vignette_missing_data_analysis.html index d46bbcb..77ff78d 100644 --- a/docs/articles/vignette_missing_data_analysis.html +++ b/docs/articles/vignette_missing_data_analysis.html @@ -31,7 +31,7 @@ grur - 0.1.0 + 0.1.1 @@ -90,7 +90,7 @@

grur missing data visualization analysis

Thierry Gosselin

-

2019-04-30

+

2019-05-01

Source: vignettes/vignette_missing_data_analysis.Rmd diff --git a/docs/authors.html b/docs/authors.html index 335cf4b..e00cdce 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -63,7 +63,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/index.html b/docs/index.html index a3f574c..df6f72d 100644 --- a/docs/index.html +++ b/docs/index.html @@ -31,7 +31,7 @@ grur - 0.1.0 + 0.1.1 @@ -90,13 +90,12 @@ -

grur

-

lifecycle Travis-CI Build Status CRAN_Status_Badge Project Status: Active – The project has reached a stable, usable state and is being actively developed. DOI packageversion Last-changedate —

+

https://thierrygosselin.github.io/grur/

The name grur |ɡro͞oˈr| was chosen because the missing genotypes dilemma with RADseq data reminds me of the cheese paradox.

Here, I don’t want to sustain a war or the controversy of cheese with holes, so choose as you like, the French Gruyère or the Swiss Emmental. The paradox is that the more cheese you have the more holes you’ll get. But, the more holes you have means the less cheese you have… So, someone could conclude, the more cheese = the less cheese ? I’ll leave that up to you, back to genomics…

@@ -266,7 +265,19 @@

Developers

- +
+

Dev status

+
    +
  • lifecycle
    • +
  • Travis-CI Build Status
    • +
  • CRAN_Status_Badge
    • +
  • Project Status: Active – The project has reached a stable, usable state and is being actively developed.
    • +
  • DOI
    • +
  • packageversion
    • +
  • Last-changedate
    • +
+
+ diff --git a/docs/news/index.html b/docs/news/index.html index ae6601f..1b366ec 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -63,7 +63,7 @@ grur - 0.1.0 + 0.1.1 @@ -124,6 +124,17 @@

Changelog

Source: NEWS.md +
+

+grur 0.1.1 2019-05-01

+
    +
  • pkgdown website
    • +
  • better function doc
    • +
  • vignettes
    • +
  • work on dependencies
    • +
  • work on travis CI
    • +
+

grur 0.1.0 2019-03-15

@@ -247,6 +258,7 @@

Contents

    +
  • 0.1.1
  • 0.1.0
  • 0.0.11
  • 0.0.10
    • diff --git a/docs/reference/Exposition_pipe_operator.html b/docs/reference/Exposition_pipe_operator.html index 3082c7c..7fa920f 100644 --- a/docs/reference/Exposition_pipe_operator.html +++ b/docs/reference/Exposition_pipe_operator.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1
diff --git a/docs/reference/blacklists_id_generator.html b/docs/reference/blacklists_id_generator.html index 3607eb5..7d09f97 100644 --- a/docs/reference/blacklists_id_generator.html +++ b/docs/reference/blacklists_id_generator.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1

diff --git a/docs/reference/compound_assignment_pipe_operator.html b/docs/reference/compound_assignment_pipe_operator.html index b64e710..32cd907 100644 --- a/docs/reference/compound_assignment_pipe_operator.html +++ b/docs/reference/compound_assignment_pipe_operator.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/data_stats.html b/docs/reference/data_stats.html index dcd9705..b217202 100644 --- a/docs/reference/data_stats.html +++ b/docs/reference/data_stats.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/decoding_haplotypes.html b/docs/reference/decoding_haplotypes.html index 2677a8d..fbceb35 100644 --- a/docs/reference/decoding_haplotypes.html +++ b/docs/reference/decoding_haplotypes.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/defactorize_gt.html b/docs/reference/defactorize_gt.html index 821e463..1755e8d 100644 --- a/docs/reference/defactorize_gt.html +++ b/docs/reference/defactorize_gt.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/encoding_snp.html b/docs/reference/encoding_snp.html index e55b5b9..923d5b1 100644 --- a/docs/reference/encoding_snp.html +++ b/docs/reference/encoding_snp.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/factorize_gt.html b/docs/reference/factorize_gt.html index af3e1f2..d7d9663 100644 --- a/docs/reference/factorize_gt.html +++ b/docs/reference/factorize_gt.html @@ -66,7 +66,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/generate_pcoa_plot.html b/docs/reference/generate_pcoa_plot.html index 2f78174..8d54ac2 100644 --- a/docs/reference/generate_pcoa_plot.html +++ b/docs/reference/generate_pcoa_plot.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/generate_sequencing_strata.html b/docs/reference/generate_sequencing_strata.html index 4821dee..b3e67a2 100644 --- a/docs/reference/generate_sequencing_strata.html +++ b/docs/reference/generate_sequencing_strata.html @@ -68,7 +68,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/grur_boost_imputer.html b/docs/reference/grur_boost_imputer.html index ba16989..27da9d9 100644 --- a/docs/reference/grur_boost_imputer.html +++ b/docs/reference/grur_boost_imputer.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/grur_imputations.html b/docs/reference/grur_imputations.html index bf9ced4..dda3938 100644 --- a/docs/reference/grur_imputations.html +++ b/docs/reference/grur_imputations.html @@ -117,7 +117,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/grur_imputer.html b/docs/reference/grur_imputer.html index 5cba016..de6dfec 100644 --- a/docs/reference/grur_imputer.html +++ b/docs/reference/grur_imputer.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/grur_lgbm_imputer.html b/docs/reference/grur_lgbm_imputer.html index 1ceddda..edb8009 100644 --- a/docs/reference/grur_lgbm_imputer.html +++ b/docs/reference/grur_lgbm_imputer.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/grur_parallel.html b/docs/reference/grur_parallel.html index f318a7b..2980e8e 100644 --- a/docs/reference/grur_parallel.html +++ b/docs/reference/grur_parallel.html @@ -75,7 +75,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/import_imputations.html b/docs/reference/import_imputations.html index 67e7a0f..3cac87b 100644 --- a/docs/reference/import_imputations.html +++ b/docs/reference/import_imputations.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/imputations_accuracy.html b/docs/reference/imputations_accuracy.html index 04b2e45..3ad5b50 100644 --- a/docs/reference/imputations_accuracy.html +++ b/docs/reference/imputations_accuracy.html @@ -66,7 +66,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/impute_genotypes.html b/docs/reference/impute_genotypes.html index fb6f705..7228dee 100644 --- a/docs/reference/impute_genotypes.html +++ b/docs/reference/impute_genotypes.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/impute_rf.html b/docs/reference/impute_rf.html index a668017..8736358 100644 --- a/docs/reference/impute_rf.html +++ b/docs/reference/impute_rf.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/ind_genotyped_helper.html b/docs/reference/ind_genotyped_helper.html index 308cce0..09c6a4c 100644 --- a/docs/reference/ind_genotyped_helper.html +++ b/docs/reference/ind_genotyped_helper.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/index.html b/docs/reference/index.html index f9bc76c..8d252d5 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -63,7 +63,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/killExcess.html b/docs/reference/killExcess.html index 49838d9..6679d6a 100644 --- a/docs/reference/killExcess.html +++ b/docs/reference/killExcess.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/landscape.new.ind.genos.html b/docs/reference/landscape.new.ind.genos.html index e94b036..eed5ed9 100644 --- a/docs/reference/landscape.new.ind.genos.html +++ b/docs/reference/landscape.new.ind.genos.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/landscape2gtypes.html b/docs/reference/landscape2gtypes.html index ca85a88..5569917 100644 --- a/docs/reference/landscape2gtypes.html +++ b/docs/reference/landscape2gtypes.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/loadLandscape.html b/docs/reference/loadLandscape.html index e8030e7..52d2c53 100644 --- a/docs/reference/loadLandscape.html +++ b/docs/reference/loadLandscape.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/markers_genotyped_helper.html b/docs/reference/markers_genotyped_helper.html index 79b7457..8ea0e0b 100644 --- a/docs/reference/markers_genotyped_helper.html +++ b/docs/reference/markers_genotyped_helper.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/memorize_missing.html b/docs/reference/memorize_missing.html index e2d092d..95cae0b 100644 --- a/docs/reference/memorize_missing.html +++ b/docs/reference/memorize_missing.html @@ -70,7 +70,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/missing_rda.html b/docs/reference/missing_rda.html index 48f86c8..db74743 100644 --- a/docs/reference/missing_rda.html +++ b/docs/reference/missing_rda.html @@ -67,7 +67,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/missing_visualization.html b/docs/reference/missing_visualization.html index 1b43da6..9df43aa 100644 --- a/docs/reference/missing_visualization.html +++ b/docs/reference/missing_visualization.html @@ -93,7 +93,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/n.html b/docs/reference/n.html index b61781b..1e85093 100644 --- a/docs/reference/n.html +++ b/docs/reference/n.html @@ -65,7 +65,7 @@ grur - 0.1.0 + 0.1.1 diff --git a/docs/reference/pct_missing_by_total.html b/docs/reference/pct_missing_by_total.html index 162cd87..aade9c9 100644 --- a/docs/reference/pct_missing_by_total.html +++ b/docs/reference/pct_missing_by_total.html @@ -65,7 +65,7 @@ grur - 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