NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%$%")
export("%<>%")
export("%>%")
export(.stackr_parallel)
export(.stackr_parallel_mc)
export(build_stackr_workflow_dir)
export(change_pop_names)
export(check_fq)
export(clean_fq)
export(clean_fq_filename)
export(clean_ind_names)
export(clean_markers_names)
export(clean_pop_names)
export(extract_catalog_sql_ids)
export(fq_file_type)
export(list_sample_file)
export(loc_pop_stats)
export(mclapply_win)
export(merge_bam)
export(merge_fq)
export(merge_parallel)
export(mismatch_dir)
export(mismatch_fig)
export(n)
export(normalize_reads)
export(pi)
export(pi_pop)
export(read_count_one)
export(read_counter)
export(read_depth_plot)
export(read_stacks_ustacks_log)
export(reads_length_distribution)
export(reads_stats)
export(rename_fq)
export(run_cstacks)
export(run_gstacks)
export(run_populations)
export(run_process_radtags)
export(run_radproc)
export(run_split_cstacks)
export(run_sstacks)
export(run_tsv2bam)
export(run_ustacks)
export(run_ustacks_one_sample)
export(separate_haplo)
export(separate_haplo_long)
export(split_bam_list)
export(split_pop_map)
export(split_tibble_rows)
export(split_vec_row)
export(stackr_normalize)
export(stats_stackr)
export(strata_haplo)
export(summary_catalog_log_lik)
export(summary_cstacks)
export(summary_genotypes)
export(summary_haplotypes)
export(summary_pstacks)
export(summary_reads)
export(summary_sstacks)
export(summary_ustacks)
export(write_normalize)
importFrom(ShortRead,readFastq)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_if)
importFrom(dplyr,tally)
importFrom(dplyr,ungroup)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(pbmcapply,pbmclapply)
importFrom(stats,IQR)
importFrom(stringdist,stringdist)