_pkgdown.yml

reference:

- title: Generate the folders
  contents:
  - build_stackr_workflow_dir

- title: stacks related functions
  contents:
  - run_process_radtags
  - run_ustacks
  - run_cstacks
  - run_sstacks
  - run_tsv2bam
  - run_gstacks
  - run_populations

- title: stacks ustacks-cstacks alternative function
  contents:
  - run_radproc

- title: Summary functions
  contents:
  - starts_with("summary_")

- title: Utility functions
  contents:
  - read_depth_plot
  - reads_length_distribution
  - clean_fq
  - read_counter
  - normalize_reads
  - rename_fq
  - extract_catalog_sql_ids


navbar:
  type: default
  left:
  - text: Get started
    href: articles/stackr.html
  - text: Reference
    href: reference/index.html
  - text: News
    href: news/index.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/thierrygosselin/stackr