diff --git a/DESCRIPTION b/DESCRIPTION index 4609bda..0f37df1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: wham Title: Woods Hole Assessment Model (WHAM) -Version: 1.0.8.9000 +Version: 1.0.9 Authors@R: c( person("Tim", "Miller", role = c("aut", "cre"), email = "timothy.j.miller@noaa.gov", diff --git a/NEWS.md b/NEWS.md index 7c47cc0..32997d3 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -wham 1.0.8.9000 (2024-04-24) +wham 1.0.9 (2024-06-13) ========================= ### IMPORTANT diff --git a/docs/404.html b/docs/404.html index 83578e3..ba48bf4 100644 --- a/docs/404.html +++ b/docs/404.html @@ -33,7 +33,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index b7cfcc6..3e098ae 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 9c8091d..525e021 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex10_simulation.html b/docs/articles/ex10_simulation.html index 6a9ac8b..b775d62 100644 --- a/docs/articles/ex10_simulation.html +++ b/docs/articles/ex10_simulation.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 @@ -321,8 +321,8 @@

2. Setup and read in model input#> } #> ans #> } -#> <bytecode: 0x00000230c44fb0f0> -#> <environment: 0x00000230c0465c00> +#> <bytecode: 0x000002092a0a4a60> +#> <environment: 0x000002091fb898b0>

As we can see it is a function, but less apparent is that it will report anything using the REPORT calls, and most importantly, those within SIMULATE statements in the compiled cpp code. diff --git a/docs/articles/ex11_catchability.html b/docs/articles/ex11_catchability.html index b3cfbeb..59053fa 100644 --- a/docs/articles/ex11_catchability.html +++ b/docs/articles/ex11_catchability.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex1_basics.html b/docs/articles/ex1_basics.html index e4cc5fa..3f03a2b 100644 --- a/docs/articles/ex1_basics.html +++ b/docs/articles/ex1_basics.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex2_CPI_recruitment.html b/docs/articles/ex2_CPI_recruitment.html index 5c709c5..e9be313 100644 --- a/docs/articles/ex2_CPI_recruitment.html +++ b/docs/articles/ex2_CPI_recruitment.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex3_projections.html b/docs/articles/ex3_projections.html index e7e6244..e91ad6b 100644 --- a/docs/articles/ex3_projections.html +++ b/docs/articles/ex3_projections.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex4_selectivity.html b/docs/articles/ex4_selectivity.html index 2c05552..12d8c7b 100644 --- a/docs/articles/ex4_selectivity.html +++ b/docs/articles/ex4_selectivity.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex5_GSI_M.html b/docs/articles/ex5_GSI_M.html index 7b37a5b..a89a126 100644 --- a/docs/articles/ex5_GSI_M.html +++ b/docs/articles/ex5_GSI_M.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex6_NAA.html b/docs/articles/ex6_NAA.html index 790a17d..4d3df4c 100644 --- a/docs/articles/ex6_NAA.html +++ b/docs/articles/ex6_NAA.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex7_debug.html b/docs/articles/ex7_debug.html index 6086064..c060507 100644 --- a/docs/articles/ex7_debug.html +++ b/docs/articles/ex7_debug.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex8_compare.html b/docs/articles/ex8_compare.html index e022a5a..e6ede28 100644 --- a/docs/articles/ex8_compare.html +++ b/docs/articles/ex8_compare.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/ex9_retro_pred.html b/docs/articles/ex9_retro_pred.html index b7abe32..1e7b4a8 100644 --- a/docs/articles/ex9_retro_pred.html +++ b/docs/articles/ex9_retro_pred.html @@ -34,7 +34,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/articles/index.html b/docs/articles/index.html index 7ab8194..458d863 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/authors.html b/docs/authors.html index b61b3cc..502835d 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/index.html b/docs/index.html index 607c39d..9fd5b6f 100644 --- a/docs/index.html +++ b/docs/index.html @@ -43,7 +43,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/news/index.html b/docs/news/index.html index 3e2ec48..83ab281 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 @@ -115,6 +115,23 @@

Changelog

Source: NEWS.md +
+

wham 1.0.9 (2024-06-13)

+
+

IMPORTANT

+
+
+

Bug fixes

+
+

wham 1.0.8 (2024-04-24)

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index bc93d43..0309b7b 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -13,7 +13,7 @@ articles: ex7_debug: ex7_debug.html ex8_compare: ex8_compare.html ex9_retro_pred: ex9_retro_pred.html -last_built: 2024-04-24T15:58Z +last_built: 2024-06-13T17:16Z urls: reference: https://timjmiller.github.io/wham/reference article: https://timjmiller.github.io/wham/articles diff --git a/docs/reference/check_convergence.html b/docs/reference/check_convergence.html index d2e88e8..e66fcc5 100644 --- a/docs/reference/check_convergence.html +++ b/docs/reference/check_convergence.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9
diff --git a/docs/reference/check_estimability.html b/docs/reference/check_estimability.html index f532e9a..1b0d933 100644 --- a/docs/reference/check_estimability.html +++ b/docs/reference/check_estimability.html @@ -24,7 +24,7 @@ wham - 1.0.8 + 1.0.9
diff --git a/docs/reference/compare_wham_models.html b/docs/reference/compare_wham_models.html index 5877ea3..57cae44 100644 --- a/docs/reference/compare_wham_models.html +++ b/docs/reference/compare_wham_models.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/extract_fixed.html b/docs/reference/extract_fixed.html index 8252216..6d23bcb 100644 --- a/docs/reference/extract_fixed.html +++ b/docs/reference/extract_fixed.html @@ -21,7 +21,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/fit_peel.html b/docs/reference/fit_peel.html index 413b2e9..4336bc4 100644 --- a/docs/reference/fit_peel.html +++ b/docs/reference/fit_peel.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/fit_tmb.html b/docs/reference/fit_tmb.html index 6ad8156..b63dc5d 100644 --- a/docs/reference/fit_tmb.html +++ b/docs/reference/fit_tmb.html @@ -19,7 +19,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/fit_wham.html b/docs/reference/fit_wham.html index fee7a96..33ba13f 100644 --- a/docs/reference/fit_wham.html +++ b/docs/reference/fit_wham.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/index.html b/docs/reference/index.html index 132d905..800f8a5 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/make_osa_residuals.html b/docs/reference/make_osa_residuals.html index 684f091..e13e638 100644 --- a/docs/reference/make_osa_residuals.html +++ b/docs/reference/make_osa_residuals.html @@ -25,7 +25,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/mohns_rho.html b/docs/reference/mohns_rho.html index e4dfb62..93b77cd 100644 --- a/docs/reference/mohns_rho.html +++ b/docs/reference/mohns_rho.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html index f60b1f0..ca74daf 100644 --- a/docs/reference/pipe.html +++ b/docs/reference/pipe.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/plot_wham_output.html b/docs/reference/plot_wham_output.html index 1268993..78436bd 100644 --- a/docs/reference/plot_wham_output.html +++ b/docs/reference/plot_wham_output.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/prepare_projection.html b/docs/reference/prepare_projection.html index 445755d..80120bc 100644 --- a/docs/reference/prepare_projection.html +++ b/docs/reference/prepare_projection.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/prepare_wham_input.html b/docs/reference/prepare_wham_input.html index 3aa84c6..7274adc 100644 --- a/docs/reference/prepare_wham_input.html +++ b/docs/reference/prepare_wham_input.html @@ -22,7 +22,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/project_wham.html b/docs/reference/project_wham.html index 991eaa2..a2b3531 100644 --- a/docs/reference/project_wham.html +++ b/docs/reference/project_wham.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/read_asap3_dat.html b/docs/reference/read_asap3_dat.html index b19eaa2..aee6d9d 100644 --- a/docs/reference/read_asap3_dat.html +++ b/docs/reference/read_asap3_dat.html @@ -21,7 +21,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/read_asap3_fit.html b/docs/reference/read_asap3_fit.html index fe039b8..c4d451b 100644 --- a/docs/reference/read_asap3_fit.html +++ b/docs/reference/read_asap3_fit.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/read_wham_fit.html b/docs/reference/read_wham_fit.html index e330019..d07c335 100644 --- a/docs/reference/read_wham_fit.html +++ b/docs/reference/read_wham_fit.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/retro.html b/docs/reference/retro.html index 55ac5d9..73ba823 100644 --- a/docs/reference/retro.html +++ b/docs/reference/retro.html @@ -18,7 +18,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/retro_res.html b/docs/reference/retro_res.html index bde2ef4..970a760 100644 --- a/docs/reference/retro_res.html +++ b/docs/reference/retro_res.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/set_age_sel0.html b/docs/reference/set_age_sel0.html index 28abac9..2e63eec 100644 --- a/docs/reference/set_age_sel0.html +++ b/docs/reference/set_age_sel0.html @@ -17,7 +17,7 @@ wham - 1.0.8 + 1.0.9 diff --git a/docs/reference/wham_html.html b/docs/reference/wham_html.html index a319189..83083d5 100644 --- a/docs/reference/wham_html.html +++ b/docs/reference/wham_html.html @@ -19,7 +19,7 @@ wham - 1.0.8 + 1.0.9