COBRApy is a package for constraint-based modeling of metabolic networks.
-
Updated
Aug 6, 2024 - Python
COBRApy is a package for constraint-based modeling of metabolic networks.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Computational synthetic biology: Predicting DNA edits for bioengineering
Ribbon diagrams of proteins in #golang.
Contact map analysis for biomolecules; based on MDTraj
Python package to study microbial communities using metabolic modeling.
Analysis of non-covalent interactions in MD trajectories
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Data processing for serial crystallography
A python package to analyse qPCR data for single-use or high-throughput application
Analyze FRET Binding Data with R
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
A Python parser for the BRENDA database
Growing suite of proteomics simulations for educational purposes
Python toolkit and package for analyzing enzyme activity data
Add a description, image, and links to the biochemistry topic page so that developers can more easily learn about it.
To associate your repository with the biochemistry topic, visit your repo's landing page and select "manage topics."