CUDA-based implementation of the Finite State Projection (FSP) algorithm.
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Updated
Aug 4, 2021 - Cuda
CUDA-based implementation of the Finite State Projection (FSP) algorithm.
Implementation of algorithms for simulating gene expression and translation in order to investigate about NF-kB model in colon cancer cells.
Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.
Matlab codes for analyzing and designing single-cell experiments.
Library for parallel direct solution of the Chemical Master Equation (CME).
Python wrapper for PACMENSL.
Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
CASTANET: Computational package for deriving Analytical STAtionary distributions of biochemical reaction networks with NEtwork Translation.
This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
A deep learning framework for solving the Chemical Master Equation
Direct solution of the Chemical Master Equation in Julia.
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