QuPath - Bioimage analysis & digital pathology
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Updated
Jul 4, 2024 - Java
QuPath - Bioimage analysis & digital pathology
List of pathology feature extractors
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Awesome List of Digital and Computational Pathology Resources
HEST: Bringing Spatial Transcriptomics and Histopathology together
Towards a general-purpose foundation model for computational pathology - Nature Medicine
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
CompSegNet: An enhanced U-shaped architecture for nuclei segmentation in H&E histopathology images
⚡ Open-source software for deep learning-based digital pathology
Source code for paper: https://arxiv.org/pdf/2305.17370.pdf
Source code for paper: https://ieeexplore.ieee.org/abstract/document/9816283
computational-pathology-pipeline
Welcome to IDSO-FA1-Pathology World!
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Personal blog on computational biology and pathology
[ISBI 2024] Accurate Subtyping of Lung Cancers by Modelling Class Dependencies
Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"
Tools for computational pathology
Classification of lung tumor slide images with the NCI Imaging Data Commons
Repository for "Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification""
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