deseq2
Here are 93 public repositories matching this topic...
Differential Gene Expression analysis in R using DESeq2
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May 3, 2024 - HTML
Simple Nextflow RNA-Seq pipeline
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Jan 24, 2024 - Nextflow
Code to reproduce Ponroy, et. al, 2020 in Human Molecular Gentetics
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May 16, 2020 - R
R workflows used to analyze microbial community sequence data
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Apr 21, 2021 - R
SBC analysis with DIGIST
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Apr 13, 2023 - R
Workflow to simulate an RNA-seq reads and perform DE-analysis
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Apr 29, 2021 - Python
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
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Jul 24, 2022
Part of the final project for an Intro to Bioinformatics graduate course. Using RStudio I ran DESeq2 to show differentially expressed genes between control mice and mice infected with RSV.
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Mar 21, 2023
Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats
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Sep 29, 2016 - R
Investigate the role of mtDNA in the sex determination/development of Potamilus streckersoni, a freshwater mussel with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
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Oct 1, 2023 - R
This repository contains an example implementation of DESeq2 in Python.
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Jul 17, 2024 - Python
Tuberculosis and the microbiome
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Feb 18, 2021 - HTML
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Jul 5, 2021 - HTML
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
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Jul 19, 2023 - Jupyter Notebook
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