The most popular open source electronic health records and medical practice management solution.

Monorepo that holds all of HospitalRun's v2 projects.

ODK Collect is an Android app for filling out forms. It's been used to collect billions of data points in challenging environments around the world. Contribute and make the world a better place! ✨📋✨

Rapid large-scale prokaryote pan genome analysis

Finds SNP sites from a multi-FASTA alignment file

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A tool to circularize genome assemblies

Unified COVID-19 Dataset

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Antimicrobial Resistance Identification By Assembly

Get assembly statistics from FASTA and FASTQ files

ODK Build is a drag-and-drop form designer for ODK XForms. Thousands of users around the world depend on it for their data collection campaigns. Contribute and make the world a better place! ✨📝✨

Infectious Disease Sequencing Platform

Python3 scripts to manipulate FASTA and FASTQ files

OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.

ODK Briefcase is a Java application for fetching and pushing forms and their contents. It helps make billions of data points from ODK portable. Contribute and make the world a better place! ✨💼✨

Improve the quality of a denovo assembly by scaffolding and gap filling

The core library that many of the ODK tools are built around. It's written in Java, implements the ODK XForms spec, and runs on mobile devices and cloud servers. ✨🏗✨

de novo virus assembler of Illumina paired reads