Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission

Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018)

Biophysically detailed model of somatosensory thalamocortical circuit (Borges et al accepted)

Ion concentration dynamics as a mechanism for neuronal bursting (Barreto & Cressman 2011)

Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)

Sodium potassium ATPase pump (Chapman et al. 1983)

NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)

LIP and FEF rhythmic attention model (Aussel et al. 2023)

Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)

Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)

Gamma genesis in the basolateral amygdala (Feng et al 2019)

Parallel Tempering MCMC on Liu et al 1998 (Wang et al 2022)

Reduction of nonlinear ODE systems possessing multiple scales (Clewley et al. 2005)

Single neuron with ion concentrations to model anoxic depolarization (Zandt et al. 2011)

Stochastic Hodgkin-Huxley Model: 14x28D Langevin Simulation (Pu and Thomas, 2020).

Thalamocortical control of propofol phase-amplitude coupling (Soplata et al 2017)

Interaural time difference detection by slowly integrating neurons (Vasilkov Tikidji-Hamburyan 2012)

High frequency oscillations induced in three gap-junction coupled neurons (Tseng et al. 2008)

Convergence regulates synchronization-dependent AP transfer in feedforward NNs (Sailamul et al 2017)

A phantom bursting mechanism for episodic bursting (Bertram et al 2008)