The official PySCeS project source code repository.
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Updated
Aug 2, 2024 - Python
The official PySCeS project source code repository.
Automatic-Differentiation-Enabled Plasma Transport in JAX
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
This repository contains a MATLAB implementation of the 1D Finite Difference Time Domain (FDTD) method for simulating the propagation of plane electromagnetic waves in a plasma medium.
ARC - Automatic Rate Calculator
Modeling molecular ensembles with scalable data structures and parallel computing
Automated chemical reaction networking with long-timescale kinetic simulations in Julia
Advanced Multilanguage Interface to CVODES and IDAS
Contains all relevant data of the 2023 GDP-Fucose paper.
A Python Framework for Modeling and Analysis of Signaling Systems
Patient-Specific Modeling in Python
Metabolic Engineering Workbench
A set of half automated MATLAB scripts for performing analysis of thermal data (TGA, DSC) and obtaining a kinetic triplet for every reaction stage
GORILLA: Guiding-center ORbit Integration with Local Linearization Approach
Machine Learning Regression Models for Kinetic Properities to predict Ignition Delay Time (IDT)
Stochastic simulation of CRISPR nucleases cleaving a pool of DNA or RNA
RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.
Code accompanying "Dynamic Promotion of the Oxygen Evolution Reaction via Programmable Metal Oxides" by S. R. Gathmann, et al. (ChemRxiv 2024)
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