kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
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Updated
Sep 26, 2024 - Rust
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kmer-composition
Here are 5 public repositories matching this topic...
K-mer counting algorithms and count-data utilities for the BioJulia framework
kmer
kmer-frequency-count
kmer-distribution
kmer-counting
biojulia
kmer-composition
kmers
kmer-spectra
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Apr 23, 2023 - Julia
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
java
graph
graph-algorithms
directed-graph
error-correcting
genome-sequencing
cycles
genome-assembly
reads
eulerian-circuit
hamiltonian-cycles
debruijn-graph
overlap-graph
kmer-composition
phi-x174
tip-removal
bubble-detection
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Updated
May 27, 2018 - Java
Test if a kmer is or is not in a set of sequences
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Updated
Apr 19, 2020 - C++
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
distance
phylogenetic-trees
genome-analysis
kmer-composition
bioinfo
hierarchical-clustering-trees
sarscov2
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Updated
May 7, 2021 - Python
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