Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
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Updated
Oct 3, 2024 - JavaScript
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
MiGA: Microbial Genomes Atlas
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A genome visualization python package for comparative genomics
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Build a partitioned pangenome graph from microbial genomes
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
🦠📇 Microbial genomes-to-report pipeline
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Genomewide Epistasis Analysis on Bacteria
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Pipeline to perform alignment & variant calling on whole-genome sequence data
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
Automated genomic analysis of SARS-CoV-2 sequence data
🦠 Project for the course of Computational Microbial Genomics
Estimate metagenomic coverage and sequence diversity
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