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May 30, 2017 - R
ngs-pipeline
Here are 112 public repositories matching this topic...
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
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Aug 15, 2017 - Shell
SRSF shape analysis framework for sequencing data
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Dec 1, 2017 - R
SRSF framework for nucleosome positioning analysis
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Feb 5, 2018 - PostScript
PISPINO (PIpits SPIN-Off tools): Bioinformatics toolkits for processing NGS data
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Mar 29, 2018 - Python
An Efficient Design of a Next Generation Sequencing pipeline with Apache Spark
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Apr 6, 2018 - PostScript
CSBB - Computational Suite For Bioinformaticians and Biologists
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May 22, 2018 - Perl
This repository contains bash shell scripts
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Jun 7, 2018 - R
This is dockerize "somatic paired-WES(Normal-Tumor) pipeline" which is refer to GATK best practice.
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Jul 26, 2018 - Python
A fast, easy way to present complex bioinformatics pipelines to biologists
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Sep 28, 2018 - Shell
CWL pipelines for the Sentieon tools
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Oct 22, 2018 - Common Workflow Language
an easy pipline for variant calling
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Nov 7, 2018 - Python
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
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Nov 8, 2018 - Python
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Jan 11, 2019 - R
CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.
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Mar 29, 2019 - HTML
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May 13, 2019 - HTML
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
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Jun 13, 2019 - Python
Computational Suite For Bioinformaticians and Biologists (CSBB) provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience
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Sep 26, 2019 - Perl
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