UAB Research Computing Documentation
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Updated
Oct 4, 2024 - Python
UAB Research Computing Documentation
a devops streamlit application for slurm job make
A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://protflow.readthedocs.io/en/latest/
Bash scripts which will help you in running JupyterLab or Jupyter Notebooks in compute nodes of HPC Clusters
asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.
DeBasher: a Flow-Based Programming Extension for Bash
A Slurm cluster using docker-compose
A super simplistic way to perform hyperparameter tuning (and other things!) on SLURM. Made to be quick and easy to use and build on! and to get your jobs done faster.
A simple multinode performance logger for Python
Analyse RNA-seq de patients atteints de lymphome folliculaire (LF) avant et après prise de lénalidomide
Creation d'une pipeline Nextflow pour analyse CHIP-seq sur cluster de calcul
An open-source toolkit for deploying and managing high performance clusters for HPC, AI, and data analytics workloads.
Open source digital rocks software platform for micro-CT, CT, thin sections and borehole image analysis. Includes tools for: annotation, AI, HPC, porous media flow simulation, porosity analysis, permeability analysis and much more.
A simple tool to perform parameter sweeps on SLURM clusters.
Slurm HPC node status page
Deploy Dask on job schedulers like PBS, SLURM, and SGE
pbs writer for pbs computing, writes the job submission for pbs
slurm pbs based genome analysis utilities
Generalized submit command for slurm / moabs
Slurm job scripts to run and analyze molecular dynamics simulations on high performance computers
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