system-biology
Here are 21 public repositories matching this topic...
Automatic rule-based modeling of metabolism, protein-protein interactions, and regulation of gene expression
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Aug 24, 2023 - Jupyter Notebook
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
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Mar 16, 2020
A rerun of the simulations of a Goldbeter paper
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Dec 8, 2022 - Jupyter Notebook
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
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Jul 16, 2019 - Jupyter Notebook
A probabilistic programing library empowered with jax to speed up large simulations (still in progress!)
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May 8, 2023 - Jupyter Notebook
a multiomics approach on lung cancer (subtype approach)
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Jun 12, 2023 - R
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Jan 1, 2018 - MATLAB
The FALCONET R package enables to build and visualise metabolic maps of GEM automatically with aid of cellDesigner 4.4 and R platform
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Feb 14, 2021 - R
Resources derived from PathMe
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Mar 31, 2019 - Jupyter Notebook
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Apr 17, 2019 - HTML
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
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May 13, 2024 - Cuda
Genome scale metabolic model for Ogataea polymorpha NCYC495.
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Nov 29, 2023 - HTML
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Dec 18, 2021 - R
SigMat: A Classification Scheme for Gene Signature Matching
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May 31, 2019 - Jupyter Notebook
Integration of pathway-related information from Reactome in BEL
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Nov 18, 2020 - Python
This repository contains the different resources derived or generated using ComPath
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Jul 27, 2021 - Jupyter Notebook
Modular cloning simulation with the MoClo framework in Python
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May 3, 2022 - Python
An Artificial Life simulator for Investigating Noogenesis
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Oct 10, 2022 - Python
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