Perform read mapping and variant calling using snippy
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Updated
Feb 22, 2024 - Nextflow
Perform read mapping and variant calling using snippy
NextFlow pipeline for mitochondria sequence reconstruction
Haplotype aware variant calling from long read sequence
A collection of data sets for benchmarking de novo variant discovery tools
Script to convert Duplex Sequencing .mutpos file formats into valid VCF files
A python script for generating sample VCF data based on a template VCF
Snake Genotyping By Sequencing. A reimplementation of Fast-GBS using snakemake.
A simple tool for SNP mutation type determination.
Transforms a VCF (variant call format) file to a tab-separated values (.tsv) one
A toolset for data pipelines in Genomics
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.
Multi-class classification of drug resistance in MTB clinical isolates
Empirical Bayes somatic variant calling
A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker
A WDL-based workflow for extraction of variants and their associated info from large VCF files
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
BSA-QTL Mapping in Drosophila Ananassae
Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
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