Long read aligner for cyclic and acyclic pangenome graphs
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Dec 20, 2023 - C
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variation-graphs
Here are 11 public repositories matching this topic...
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
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Nov 22, 2024 - Python
Strain-level abundances estimation in metagenomic samples using variation graphs
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Jan 29, 2023 - Python
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
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Mar 20, 2024 - Python
Analysis of shared parts of a pangenome
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Jul 12, 2024 - Python
Library to parse, edit and handle in memory GFA graphs
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Nov 22, 2024 - Python
Notes upon pangenome graphs construction
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Oct 17, 2024 - TypeScript
SPARQL endpoint to represent pangenomic data
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Mar 28, 2024 - HTML
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance
distance-measures
variation-graph
distance-calculation
pangenomics
pangenome
graph-distance
variation-graphs
pangenome-graph
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Nov 19, 2024 - Rust
Alignment of Pangenome Graphs with Ricci Flow
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Sep 12, 2024 - Jupyter Notebook
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