-
Notifications
You must be signed in to change notification settings - Fork 144
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Problem with Holoviews #245
Comments
This is an example notebook with the error output. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
When running
w2_majorana/nanowire.md
, I ran into problems when usingHoloviews
. Basically, whenever there is a graph with a bar to tune the parameters, I getModuleNotFoundError: No module named 'bokeh.models.arrow_heads'
, see, for example, the section in the notebook attached called "The need for spin."I know this is because my
bokeh
version is 3.1.1, which is too high (bokeh.models.arrow_heads'
only exists forbokeh<3
), but changing it to version 2.4.3 introduces additional errors concerning the packagepanel
. A complete list of packages and their versions in myPython 3.9.16
conda environment created fromenvironment.yml
is:accessible-pygments 0.0.4
alabaster 0.7.13
anyio 3.7.0
appnope 0.1.3
argon2-cffi 21.3.0
argon2-cffi-bindings 21.2.0
asttokens 2.2.1
attrs 23.1.0
Babel 2.12.1
backcall 0.2.0
backports.functools-lru-cache 1.6.4
beautifulsoup4 4.12.2
bleach 6.0.0
bokeh 3.1.1
certifi 2023.5.7
cffi 1.15.1
charset-normalizer 3.1.0
click 8.1.3
colorama 0.4.6
colorcet 3.0.1
comm 0.1.3
contourpy 1.1.0
crossrefapi 1.5.0
cycler 0.11.0
debugpy 1.6.7
decorator 5.1.1
defusedxml 0.7.1
docutils 0.18.1
entrypoints 0.4
exceptiongroup 1.1.1
executing 1.2.0
fastcache 1.1.0
fastjsonschema 2.17.1
feedparser 6.0.10
flit_core 3.9.0
gmpy2 2.1.2
greenlet 2.0.2
holoviews 1.13.1
idna 3.4
imagesize 1.4.1
importlib-metadata 6.6.0
importlib-resources 5.12.0
iniconfig 2.0.0
ipykernel 6.23.1
ipython 8.14.0
ipython-genutils 0.2.0
jedi 0.18.2
Jinja2 3.1.2
jsonschema 4.17.3
jupyter-book 0.15.1
jupyter-cache 0.6.1
jupyter_client 8.2.0
jupyter_core 5.3.1
jupyter-events 0.6.3
jupyter_server 2.6.0
jupyter_server_terminals 0.4.4
jupyterlab-pygments 0.2.2
jupytext 1.14.6
kiwisolver 1.4.4
kwant 1.4.3
latexcodec 2.0.1
linkify-it-py 2.0.0
Markdown 3.4.3
markdown-it-py 2.2.0
MarkupSafe 2.1.3
matplotlib 3.3.4
matplotlib-inline 0.1.6
mdit-py-plugins 0.3.5
mdurl 0.1.0
mistune 2.0.5
mpmath 1.3.0
myst-nb 0.17.2
myst-parser 0.18.1
nbclassic 1.0.0
nbclient 0.7.4
nbconvert 7.5.0
nbformat 5.9.0
nest-asyncio 1.5.6
notebook 6.5.4
notebook_shim 0.2.3
numpy 1.22.4
overrides 7.3.1
packaging 23.1
pandas 2.0.2
pandocfilters 1.5.0
panel 1.1.0
param 1.13.0
parso 0.8.3
pexpect 4.8.0
pfapack 0.3.1
pickleshare 0.7.5
Pillow 9.5.0
pip 23.1.2
pkgutil_resolve_name 1.3.10
platformdirs 3.5.3
pluggy 1.0.0
prometheus-client 0.17.0
prompt-toolkit 3.0.38
psutil 5.9.5
ptyprocess 0.7.0
publist 0.1.2.dev9+g1c02a37
pure-eval 0.2.2
pybtex 0.24.0
pybtex-docutils 1.0.2
pycparser 2.21
pyct 0.4.6
pydata-sphinx-theme 0.13.3
Pygments 2.15.1
pyobjc-core 9.2
pyobjc-framework-Cocoa 9.2
pyparsing 3.0.9
pyrsistent 0.19.3
PySocks 1.7.1
pytest 7.3.2
python-dateutil 2.8.2
python-json-logger 2.0.7
pytz 2023.3
pyviz-comms 2.3.2
PyYAML 6.0
pyzmq 25.1.0
qsymm 1.3.0
requests 2.31.0
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
ruamel.yaml 0.17.32
ruamel.yaml.clib 0.2.7
SciPy 1.7.3
Send2Trash 1.8.2
setuptools 67.7.2
sgmllib3k 1.0.0
six 1.16.0
sniffio 1.3.0
snowballstemmer 2.2.0
soupsieve 2.3.2.post1
Sphinx 5.0.2
sphinx-book-theme 1.0.1
sphinx-comments 0.0.3
sphinx-copybutton 0.5.2
sphinx_design 0.3.0
sphinx_external_toc 0.3.1
sphinx-jupyterbook-latex 0.5.2
sphinx-multitoc-numbering 0.1.3
sphinx-thebe 0.2.1
sphinx-togglebutton 0.3.2
sphinxcontrib-applehelp 1.0.4
sphinxcontrib-bibtex 2.5.0
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 2.0.1
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.5
sphinxext-opengraph 0.8.2
SQLAlchemy 2.0.16
stack-data 0.6.2
sympy 1.6.2
tabulate 0.9.0
terminado 0.17.1
tinyarray 1.2.4
tinycss2 1.2.1
toml 0.10.2
tomli 2.0.1
tornado 6.3.2
tqdm 4.65.0
traitlets 5.9.0
typing_extensions 4.6.3
typing-utils 0.1.0
tzdata 2023.3
uc-micro-py 1.0.1
urllib3 2.0.3
wcwidth 0.2.6
webencodings 0.5.1
websocket-client 1.5.3
wheel 0.40.0
xyzservices 2023.5.0
zipp 3.15.0
I believe the error is a result of incompatibility with `Holoviews', 'panel', and 'bokeh'. I can't simply upgrade everything to the newest version because the code is incompatible. I hope you can give me the complete list of packages and versions that this project can run successfully without errors.
The text was updated successfully, but these errors were encountered: