VSEARCH 2.15.0

Update manual and documentation. Turn on notrunclabels option for sintax command by default. Change maxhits 0 to mean unlimited hits, like the default. Allow non-ascii characters in headers, with a warning. Sort centroids and uc too when clusterout_sort specified. Add cluster id to centroids output when clusterout_id specified. Improve error messages when parsing FASTQ files. Add missing fastq_qminout option and fix label_suffix option for fastq_mergepairs. Add derep_id command that dereplicates based on both label and sequence. Remove compilation warnings.

VSEARCH 2.14.2

Fixed some issues with the cut, fastx_revcomp, fastq_convert, fastq_mergepairs, and makeudb_usearch commands. Updated manual.

VSEARCH 2.14.1

Fixed bug with sequences written to file specified with fastaout_rev for commands fastx_filter and fastq_filter.

VSEARCH 2.14.0

Added relabel_self option. Added fasta_width, sizein, sizeout and relabelling options as valid for certain commands.

VSEARCH 2.13.7

Fixes a bug when generating consensus sequences.

VSEARCH 2.13.6

Added info about the cut command to the output of the help command.

This should have been version 2.14.1 as it is a minor fix for version 2.13.5 which should have been version 2.14.0.

VSEARCH 2.13.5

Added cut command to fragment sequences at restriction sites. Silenced output from the fastq_stats command if quiet option was given. Updated manual.

This should have been 2.14.0 as it is not just a bug fix, but adds new features.

VSEARCH 2.13.4

Added information about support for gzip- and bzip2-compressed input files to the output of the version command. Adapted source code for compilation on FreeBSD and NetBSD systems.

VSEARCH 2.13.3

Fix bug in FASTQ parsing introduced in version 2.13.2.

VSEARCH 2.13.1

Minor changes to the allowed options for each command. All commands now allow the log, quiet and threads options. If more than 1 thread is specified for commands that are not multi-threaded, a warning will be issued. Minor changes to the manual.