| Time | Topic | Trainer |
|---|---|---|
| 8:00-8:30 am | Registration | Local supporting staff |
| 8:30-9:00 am | Welcome and Introductions | Prof. Faisal M. Fadlelmola |
| 9:00 am to 10:30 am | Introduction to NGS analysis methods | Aled Jones |
| 10:30 am to 11:00 am | Coffee / Tea Beak/ student presentation | |
| 11:00 am to 1:00 pm | Introduction to Unix | Richard Smith-Unna |
| 1:00 pm to 2:00 pm | Lunch | |
| 2:00 pm to 3:30 pm | Practical: Unix | Richard Smith-Unna |
| 3:30 pm to 4:00 pm | Coffee / Tea Beak/ student presentation | |
| 4:00pm to 6:00 pm | Practical: R | Richard Smith-Unna |
| Time | Topic | Trainer |
|---|---|---|
| 9:00 am to 10:30 am | Graphics in R | Richard Smith-Unna |
| 10:30 am to 11:00 am | Coffee / Tea Beak/ student presentation | |
| 11:00 am to 1:00 pm | alignment basics and RNAseq | Richard Smith-Unna |
| 1:00 pm to 2:00 pm | Lunch/ student presentation | |
| 2:00 pm to 3:30 pm | Practical: Graphics in R | Richard Smith-Unna |
| 3:30 pm to 4:00 pm | Coffee / Tea Beak/ student presentation | |
| 4:00pm to 6:00 pm | Practical: alignment basics and RNAseq | Richard Smith-Unna |
| Time | Topic | Trainer |
|---|---|---|
| 9:00 am to 10:30 am | Approaches to sequence mapping and genotyping | Aled Jones |
| 10:30 am to 11:00 am | Coffee / Tea Beak/ student presentation | |
| 11:00 am to 1:00 pm | Approaches to transcriptome analysis | Richard Smith-Unna |
| 1:00 pm to 2:00 pm | Lunch/ student presentation | |
| 2:00 pm to 3:30 pm | Practical: RNAseq QC and differential expression analysis | Richard Smith-Unna |
| 3:30 pm to 4:00 pm | Coffee / Tea Beak/ student presentation | |
| 4:00pm to 6:00 pm | Practical: RNAseq visualisation, discovering novel isoforms | Richard Smith-Unna |
## Wednesday 16th March 2016
| Time | Topic | Trainer |
|---|---|---|
| 9:00 am to 10:30 am | Whole exome data and variant calling | Aled Jones |
| 10:30 am to 11:00 am | Coffee / Tea Beak/ student presentation | |
| 11:00 am to 1:00 pm | Target genes identification | Aled Jones |
| 1:00 pm to 2:00 pm | Lunch/ student presentation | |
| 2:00 pm to 3:30 pm | Practical: Whole exome data and variant calling | Aled Jones |
| 3:30 pm to 4:00 pm | Coffee / Tea Beak/ student presentation | |
| 4:00pm to 6:00 pm | Practical: Target genes identification | Aled Jones |
| Time | Topic | Trainer |
|---|---|---|
| 9:00 am to 10:30 am | Summary of the case study of WES data analysis | Aled Jones |
| 10:30 am to 11:00 am | Coffee / Tea Beak/ student presentation | |
| 11:00 am to 1:00 pm | Summary of the case study of RNA-Seq data analysis | Richard Smith-Unna |
| 1:00 pm to 2:00 pm | Lunch/ student presentation | |
| 2:00 pm to 3:30 pm | Practical: Case study of WES data analysis | Aled Jones |
| 3:30 pm to 4:00 pm | Coffee / Tea Beak/ student presentation | |
| 4:00pm to 6:00 pm | Practical: Case study of RNA-Seq data analysis | Richard Smith-Unna |