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snippy core took isolate as ref #563
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Hi! Hope this helps. Alejandro |
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Hi Seeman
I ran snippy on mutliple isolates with the input.tab
snippy-multi input.tab --ref ../gubbins_dir/ref_seq_dir/GCF_001600975_1_ASM160097v1.fasta --cpus 16 > runme.sh
When checked the file runme.sh, I noticed one of my isolates written as ref.
snippy-core --ref 'isol19001326/ref.fa' isol19001326 ...
Any idea?
Should the reference sequence be in the input.tab as well?
Thanks,
TJ
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