From a02967b6fd7a944a439878c1ca57d4df531f60c4 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 10:19:00 +0200
Subject: [PATCH 01/16] Create publish.yml

---
 .github/workflows/publish.yml | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 .github/workflows/publish.yml

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
new file mode 100644
index 0000000..11378d5
--- /dev/null
+++ b/.github/workflows/publish.yml
@@ -0,0 +1,32 @@
+name: Publish your documentation
+
+on:
+  push:
+    branches:
+      - dev
+      - main
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - uses: actions/setup-node@v1
+      with:
+        node-version: '14'
+        registry-url: https://registry.npmjs.org/
+  
+    - name: Install and publish
+      run: |
+        startClean=""
+        # Check on which branch it is running
+        if [[ ${GITHUB_REF} == "refs/heads/main" ]]; then
+          startClean="--cleanStart --confirm"
+        fi
+
+        # Install doctor
+        npm i @estruyf/doctor -g
+
+        # Start doctor publish
+        doctor publish --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean 

From d4f32a2ca79285e84e24553f2dd355933e417e4e Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 10:26:58 +0200
Subject: [PATCH 02/16] Update publish.yml

---
 .github/workflows/publish.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 11378d5..9095b9c 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -3,8 +3,7 @@ name: Publish your documentation
 on:
   push:
     branches:
-      - dev
-      - main
+      - master
 
 jobs:
   build:

From 551924c47803e9013070a13c1cabb6064c1a1002 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 10:47:55 +0200
Subject: [PATCH 03/16] Update publish.yml

---
 .github/workflows/publish.yml | 39 +++++++++++------------------------
 1 file changed, 12 insertions(+), 27 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 9095b9c..051467d 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -1,31 +1,16 @@
-name: Publish your documentation
-
-on:
-  push:
-    branches:
-      - master
-
+name: Build and Deploy
+on: [push]
+permissions:
+  contents: write
 jobs:
-  build:
+  build-and-deploy:
+    concurrency: ci-${{ github.ref }} # Recommended if you intend to make multiple deployments in quick succession.
     runs-on: ubuntu-latest
-
     steps:
-    - uses: actions/checkout@v2
-    - uses: actions/setup-node@v1
-      with:
-        node-version: '14'
-        registry-url: https://registry.npmjs.org/
-  
-    - name: Install and publish
-      run: |
-        startClean=""
-        # Check on which branch it is running
-        if [[ ${GITHUB_REF} == "refs/heads/main" ]]; then
-          startClean="--cleanStart --confirm"
-        fi
-
-        # Install doctor
-        npm i @estruyf/doctor -g
+      - name: Checkout 🛎️
+        uses: actions/checkout@v3
 
-        # Start doctor publish
-        doctor publish --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean 
+      - name: Deploy 🚀
+        uses: JamesIves/github-pages-deploy-action@v4
+        with:
+          folder: docs/build # The folder the action should deploy.

From 0ff34bf4aa5e3237b05879bf85f97015e3ac4e82 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 10:54:54 +0200
Subject: [PATCH 04/16] Delete publish-pypi.yml

---
 .github/workflows/publish-pypi.yml | 39 ------------------------------
 1 file changed, 39 deletions(-)
 delete mode 100644 .github/workflows/publish-pypi.yml

diff --git a/.github/workflows/publish-pypi.yml b/.github/workflows/publish-pypi.yml
deleted file mode 100644
index 2413f97..0000000
--- a/.github/workflows/publish-pypi.yml
+++ /dev/null
@@ -1,39 +0,0 @@
-# This workflow will upload a Python Package using flit when a release is
-# created.  For more information see:
-# https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
-
-name: PyPI upload
-
-on:
-  release:
-    types: [created]
-
-jobs:
-  publish_pypi:
-    name: Publish package to PyPI
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v3
-      with:
-        fetch-depth: 0
-
-    - name: Set up Python
-      uses: actions/setup-python@v4
-      with:
-        python-version: '3.x'
-
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install wheel twine setuptools
-
-    - name: Build and publish
-      env:
-        TWINE_USERNAME: __token__
-        # The PYPI_PASSWORD must be a pypi token with the "pypi-" prefix with sufficient permissions to upload this package
-        # https://pypi.org/help/#apitoken
-        TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
-      run: |
-        python setup.py sdist bdist_wheel
-        twine upload dist/*

From 30538967e4004470fad94eec10f8d778e30d0aeb Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:24:06 +0200
Subject: [PATCH 05/16] Update publish.yml

---
 .github/workflows/publish.yml | 30 +++++++++++++++++++-----------
 1 file changed, 19 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 051467d..863d3b8 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -1,16 +1,24 @@
-name: Build and Deploy
-on: [push]
+name: Docs
+on: [push, pull_request, workflow_dispatch]
 permissions:
-  contents: write
+    contents: write
 jobs:
-  build-and-deploy:
-    concurrency: ci-${{ github.ref }} # Recommended if you intend to make multiple deployments in quick succession.
+  docs:
     runs-on: ubuntu-latest
     steps:
-      - name: Checkout 🛎️
-        uses: actions/checkout@v3
-
-      - name: Deploy 🚀
-        uses: JamesIves/github-pages-deploy-action@v4
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v3
+      - name: Install dependencies
+        run: |
+          pip install sphinx sphinx_rtd_theme
+      - name: Sphinx build
+        run: |
+          sphinx-build doc _build
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
         with:
-          folder: docs/build # The folder the action should deploy.
+          publish_branch: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: docs/build/
+          force_orphan: true

From 8a36bcc7cfcba60348f13e14660925eb228fc2ab Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:24:23 +0200
Subject: [PATCH 06/16] Update publish.yml

---
 .github/workflows/publish.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 863d3b8..baac22a 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -18,7 +18,7 @@ jobs:
         uses: peaceiris/actions-gh-pages@v3
         if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
         with:
-          publish_branch: gh-pages
+          publish_branch: master
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: docs/build/
           force_orphan: true

From 22adf86f51ede912bb04e7d1697374a6bee58edb Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:28:00 +0200
Subject: [PATCH 07/16] Update publish.yml

---
 .github/workflows/publish.yml | 50 ++++++++++++++++++++---------------
 1 file changed, 29 insertions(+), 21 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index baac22a..6f61274 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -1,24 +1,32 @@
-name: Docs
-on: [push, pull_request, workflow_dispatch]
-permissions:
-    contents: write
+name: Publish your documentation
+
+on:
+  push:
+    branches:
+      - dev
+      - main
+
 jobs:
-  docs:
+  build:
     runs-on: ubuntu-latest
+
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v3
-      - name: Install dependencies
-        run: |
-          pip install sphinx sphinx_rtd_theme
-      - name: Sphinx build
-        run: |
-          sphinx-build doc _build
-      - name: Deploy
-        uses: peaceiris/actions-gh-pages@v3
-        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
-        with:
-          publish_branch: master
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: docs/build/
-          force_orphan: true
+    - uses: actions/checkout@v2
+    - uses: actions/setup-node@v1
+      with:
+        node-version: '14'
+        registry-url: https://registry.npmjs.org/
+  
+    - name: Install and publish
+      run: |
+        startClean=""
+        # Check on which branch it is running
+        if [[ ${GITHUB_REF} == "refs/heads/main" ]]; then
+          startClean="--cleanStart --confirm"
+        fi
+
+        # Install doctor
+        npm i @estruyf/doctor -g
+
+        # Start doctor publish
+        doctor publish --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean  

From 28f10e1b6996d1e85aa44117ba3524e35bad4712 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:28:21 +0200
Subject: [PATCH 08/16] Update publish.yml

---
 .github/workflows/publish.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 6f61274..21f53f6 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -3,8 +3,7 @@ name: Publish your documentation
 on:
   push:
     branches:
-      - dev
-      - main
+    - master
 
 jobs:
   build:

From 29afc8519244c00bd7edd393a5785b5bc5d98820 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:31:09 +0200
Subject: [PATCH 09/16] Update publish.yml

---
 .github/workflows/publish.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 21f53f6..8353b16 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -28,4 +28,4 @@ jobs:
         npm i @estruyf/doctor -g
 
         # Start doctor publish
-        doctor publish --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean  
+        doctor deploy --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean --built-docs docs/build/html . 

From f5bf07343c2c89625340eb37633e64a9f3170863 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:31:36 +0200
Subject: [PATCH 10/16] Update publish.yml

---
 .github/workflows/publish.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 8353b16..7515fbb 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -20,7 +20,7 @@ jobs:
       run: |
         startClean=""
         # Check on which branch it is running
-        if [[ ${GITHUB_REF} == "refs/heads/main" ]]; then
+        if [[ ${GITHUB_REF} == "refs/heads/master" ]]; then
           startClean="--cleanStart --confirm"
         fi
 

From 28bd271cc58433d8541bbcb49cc3810072fdfebe Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:46:19 +0200
Subject: [PATCH 11/16] Delete publish.yml

---
 .github/workflows/publish.yml | 31 -------------------------------
 1 file changed, 31 deletions(-)
 delete mode 100644 .github/workflows/publish.yml

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
deleted file mode 100644
index 7515fbb..0000000
--- a/.github/workflows/publish.yml
+++ /dev/null
@@ -1,31 +0,0 @@
-name: Publish your documentation
-
-on:
-  push:
-    branches:
-    - master
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v2
-    - uses: actions/setup-node@v1
-      with:
-        node-version: '14'
-        registry-url: https://registry.npmjs.org/
-  
-    - name: Install and publish
-      run: |
-        startClean=""
-        # Check on which branch it is running
-        if [[ ${GITHUB_REF} == "refs/heads/master" ]]; then
-          startClean="--cleanStart --confirm"
-        fi
-
-        # Install doctor
-        npm i @estruyf/doctor -g
-
-        # Start doctor publish
-        doctor deploy --auth password --username "${{ secrets.USERNAME }}" --password "${{ secrets.PASSWORD }}" -u "${{ secrets.SITEURL }}" $startClean --built-docs docs/build/html . 

From 463ba460fd2633a9bf6b6327bd417ef921889fb6 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:53:42 +0200
Subject: [PATCH 12/16] Update docs.yml

---
 .github/workflows/docs.yml | 81 +++++++++++++++-----------------------
 1 file changed, 31 insertions(+), 50 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index a19c69a..b057036 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -1,52 +1,33 @@
 name: Build Documentation
 
-on:
-  push:
-  pull_request:
-
-jobs:
-  build_docs:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.10"]
-      fail-fast: false
-
-    defaults:
-      run:
-        shell: bash -l {0}
-
-    steps:
-      - name: Set env vars
-        run: |
-          export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/}  # just the repo, as opposed to org/repo
-          echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV
-
-      - name: Checkout the code
-        uses: actions/checkout@v3
-        with:
-          fetch-depth: 1000  # should be enough to reach the most recent tag
-
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Install documentation-building requirements
-        run: |
-          # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html.
-          set -vxeuo pipefail
-
-          # These packages are installed in the base environment but may be older
-          # versions. Explicitly upgrade them because they often create
-          # installation problems if out of date.
-          python -m pip install --upgrade pip setuptools numpy
-    
-          pip install .
-          pip install -r requirements-dev.txt
-          pip list
-
-      - uses: actions/upload-artifact@v3
-        with:
-          name: ${{ env.REPOSITORY_NAME }}-docs
-          path: docs/build/html/
+dist: jammy
+language: python
+python:
+  - 3.9
+cache:
+  directories:
+    - $HOME/.cache/pip
+    - $HOME/.ccache  # https://github.com/travis-ci/travis-ci/issues/5853
+addons:
+  apt_packages:
+    - pandoc
+env:
+  global:
+    # Doctr deploy key for twguest/phenom
+    - secure: "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"
+install:
+  # Install this package and the packages listed in requirements.txt.
+  - pip install .
+  - pip install ur
+  # Install extra requirements for running tests and building docs.
+  - pip install -r requirements-dev.txt
+
+script:
+  - coverage run -m pytest  # Run the tests and check for test coverage.
+  - coverage report -m  # Generate test coverage report.
+  - sudo apt install pandoc 
+  - pip install pandoc
+  - pip install doctr
+
+  - doctr deploy --built-docs docs/build/html .
+      

From 795de7b985cfd8fa6fd4a52e823914ab31d0df42 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 11:54:41 +0200
Subject: [PATCH 13/16] Update docs.yml

---
 .github/workflows/docs.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index b057036..cf6e242 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -1,5 +1,9 @@
 name: Build Documentation
 
+on:
+  pull_request:
+  push:
+  
 dist: jammy
 language: python
 python:

From 641b19acb9a3fff5cb4e54ae19a8d3830baa2d6a Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 12:02:39 +0200
Subject: [PATCH 14/16] Create static.yml

---
 .github/workflows/static.yml | 43 ++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)
 create mode 100644 .github/workflows/static.yml

diff --git a/.github/workflows/static.yml b/.github/workflows/static.yml
new file mode 100644
index 0000000..1c2e111
--- /dev/null
+++ b/.github/workflows/static.yml
@@ -0,0 +1,43 @@
+# Simple workflow for deploying static content to GitHub Pages
+name: Deploy static content to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["master"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Single deploy job since we're just deploying
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Setup Pages
+        uses: actions/configure-pages@v3
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v1
+        with:
+          # Upload entire repository
+          path: 'docs/build/html/'
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v2

From 7e46664659744e3050552c85d46d804701585634 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 12:02:47 +0200
Subject: [PATCH 15/16] Delete docs.yml

---
 .github/workflows/docs.yml | 37 -------------------------------------
 1 file changed, 37 deletions(-)
 delete mode 100644 .github/workflows/docs.yml

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
deleted file mode 100644
index cf6e242..0000000
--- a/.github/workflows/docs.yml
+++ /dev/null
@@ -1,37 +0,0 @@
-name: Build Documentation
-
-on:
-  pull_request:
-  push:
-  
-dist: jammy
-language: python
-python:
-  - 3.9
-cache:
-  directories:
-    - $HOME/.cache/pip
-    - $HOME/.ccache  # https://github.com/travis-ci/travis-ci/issues/5853
-addons:
-  apt_packages:
-    - pandoc
-env:
-  global:
-    # Doctr deploy key for twguest/phenom
-    - secure: "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"
-install:
-  # Install this package and the packages listed in requirements.txt.
-  - pip install .
-  - pip install ur
-  # Install extra requirements for running tests and building docs.
-  - pip install -r requirements-dev.txt
-
-script:
-  - coverage run -m pytest  # Run the tests and check for test coverage.
-  - coverage report -m  # Generate test coverage report.
-  - sudo apt install pandoc 
-  - pip install pandoc
-  - pip install doctr
-
-  - doctr deploy --built-docs docs/build/html .
-      

From 6442fdd6b5312de11038e5c42d7be2db66924859 Mon Sep 17 00:00:00 2001
From: Trey Guest <twguest@students.latrobe.edu.au>
Date: Mon, 10 Jul 2023 13:55:09 +0200
Subject: [PATCH 16/16] Update README.md

---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 2fa29bf..d1adfc2 100644
--- a/README.md
+++ b/README.md
@@ -19,9 +19,9 @@ To check that your instillation has worked, open iPython and try::
 ## Examples
 Phenom has been designed to require minimal knowledge of the XFEL process prior to generating your first pulse.
 
-1. [Getting Started](https://github.com/twguest/phenom/blob/master/docs/build/html/notebooks/sase_model_pt1.ipynb)
-2. [Tutorials](https://github.com/twguest/phenom/blob/master/docs/build/html/notebooks/sase_model_pt2.ipynb).
-3. [Integrating with WPG](https://github.com/twguest/phenom/blob/master/docs/build/html/notebooks/phenom_to_wpg.ipynb).
+1. [Getting Started](https://twguest.github.io/phenom/notebooks/sase_model_pt1.html)
+2. [Tutorials](https://twguest.github.io/phenom/notebooks/sase_model_pt2.ipynb).
+3. [Integrating with WPG](https://twguest.github.io/phenom/notebooks/phenom_to_wpg.ipynb).
 
 More details on generating these pulses can be found in the [documentation](https://twguest.github.io/phenom).