diff --git a/PyLOH.py b/PyLOH.py index d6dbe4c..f9d8a95 100755 --- a/PyLOH.py +++ b/PyLOH.py @@ -44,7 +44,7 @@ help='''BED file for segments. If not provided, use autosomes as segments. Default is None.''') -parser_preprocess.add_argument('--WES', default=False, action='store_true', type=bool, +parser_preprocess.add_argument('--WES', default=False, action='store_true', help='''Flag indicating whether the BAM files are whole exome sequencing(WES) or not. If not provided, the BAM files are assumed to be whole genome sequencing(WGS). Default is False.''')