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Update samtools #109

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niemasd opened this issue Jul 10, 2021 · 1 comment
Closed

Update samtools #109

niemasd opened this issue Jul 10, 2021 · 1 comment

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@niemasd
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niemasd commented Jul 10, 2021

A new version of samtools was just released, and I see that one of the features is that samtools depth was rewritten to be faster and more memory efficient. That's not a bottleneck of our pipeline, but it would still be good to update at some point (though not urgent):

https://github.com/samtools/samtools/releases/tag/1.13
@AmandaBirmingham
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Merged with #72

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@niemasd @AmandaBirmingham