Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

sarscov2_v2_primers.bed #157

Open
antoine4ucsd opened this issue Aug 23, 2022 · 0 comments
Open

sarscov2_v2_primers.bed #157

antoine4ucsd opened this issue Aug 23, 2022 · 0 comments

Comments

@antoine4ucsd
Copy link

Hello
thank you for providing all these precious info
I am trying to reformat the bed file sarscov2_v2_primers.bed but having a hard time identifying the pairs of F/R primers.
I initially thought that the primer number was the number before its orientation (e.g. 88 in covid19genome_200-29703_s7490_U_88F) but it appears that there is >2 primers with 88 ID and also others that do not have this index.
can you help identifying those pairs .
My pipeline works differently and I want to reformat like this
ref start end end start pair
MN908947.3 21 46 581 558 primerpair_namexx

thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant