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From: "Laurent, Louise"
Date: Thursday, March 18, 2021 at 11:21 AM
Subject: Re: Indel flag and Pangolin calls
Hi All,
A few adjustments to the below, based on Kristian's input on this morning's 10 am call -- pending Katie/Amanda checking with Karthik and Al that these fit what Bjorn does:
[snip]
1.5. The <coverage_gte_10_reads> value will be used to filter out samples that have coverage <70%. Therefore, only samples with coverage >=70% go onto the step # 2. [running Bjorn]
[snip]
The text was updated successfully, but these errors were encountered:
AmandaBirmingham
changed the title
Exclude consensus sequences with "coverage" <70% from Bjorn processing
Exclude consensus sequences with coverage_gte_10_reads <70% from Bjorn processing
Mar 19, 2021
From: "Laurent, Louise"
Date: Thursday, March 18, 2021 at 11:21 AM
Subject: Re: Indel flag and Pangolin calls
Hi All,
A few adjustments to the below, based on Kristian's input on this morning's 10 am call -- pending Katie/Amanda checking with Karthik and Al that these fit what Bjorn does:
[snip]
1.5. The <coverage_gte_10_reads> value will be used to filter out samples that have coverage <70%. Therefore, only samples with coverage >=70% go onto the step # 2. [running Bjorn]
[snip]
The text was updated successfully, but these errors were encountered: