-
Notifications
You must be signed in to change notification settings - Fork 2
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Update ViralMSA #92
Labels
Comments
I've made a couple more updates to ViralMSA since then, so I'll keep the version number in the issue generic. No major changes have been made, so whenever we get around to it, we can update to the newest version |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Earlier today, I fixed a bug in ViralMSA in which consensus sequences with long stretches of
NNNN...NNNN
sometimes would get truncated (I think when stretch length was greater than ~300), and I incorporated the fix into ViralMSA 1.1.12. I don't think we should ever be encountering this bug given that we are only performing phylogenetic inference on high-quality consensus sequences (so we shouldn't have long stretches ofNNN...
), but it would be good to update just in caseNote that ViralMSA can be updated as follows (assuming
ViralMSA.py
is in yourPATH
):EDIT (2021-04-14): I just rolled out ViralMSA 1.1.13. The new feature implemented in this version is not relevant to our analysis, but just wanted to update my GitHub Issue accordingly (
ViralMSA.py -u
will update to 1.1.13)The text was updated successfully, but these errors were encountered: