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.pre-commit-config.yaml
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.pre-commit-config.yaml
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default_language_version:
python: python3
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.3.0
hooks:
# list of supported hooks: https://pre-commit.com/hooks.html
- id: trailing-whitespace
- id: end-of-file-fixer
- id: check-docstring-first
- id: check-yaml
- id: debug-statements
- id: detect-private-key
- id: check-executables-have-shebangs
- id: check-toml
- id: check-case-conflict
#- id: check-added-large-files
# python code formatting
- repo: https://github.com/psf/black
rev: 22.6.0
hooks:
- id: black
args: [--line-length, "99"]
# python import sorting
- repo: https://github.com/PyCQA/isort
rev: 5.12.0
hooks:
- id: isort
args: ["--profile", "black", "--filter-files"]
# python upgrading syntax to newer version
- repo: https://github.com/asottile/pyupgrade
rev: v2.32.1
hooks:
- id: pyupgrade
args: [--py38-plus]
# python docstring formatting
- repo: https://github.com/myint/docformatter
rev: v1.4
hooks:
- id: docformatter
args: [--in-place, --wrap-summaries=99, --wrap-descriptions=99]
# python check (PEP8), programming errors and code complexity
- repo: https://github.com/PyCQA/flake8
rev: 4.0.1
hooks:
- id: flake8
args:
[
"--extend-ignore",
"E203,E402,E501,F401,F841",
"--exclude",
"logs/*,data/*",
]
# python security linter
- repo: https://github.com/PyCQA/bandit
rev: "1.7.1"
hooks:
- id: bandit
args: ["-s", "B101"]
# python ruff linter
#- repo: https://github.com/charliermarsh/ruff-pre-commit
# rev: "v0.0.254"
# hooks:
# - id: ruff
# args: [--fix, --exit-non-zero-on-fix]
# yaml formatting
#- repo: https://github.com/pre-commit/mirrors-prettier
# rev: v2.1.0
# hooks:
# - id: prettier
# types: [yaml]
# shell scripts linter
# - repo: https://github.com/shellcheck-py/shellcheck-py
# rev: v0.8.0.4
# hooks:
# - id: shellcheck
# md formatting
- repo: https://github.com/executablebooks/mdformat
rev: 0.7.14
hooks:
- id: mdformat
args: ["--number"]
additional_dependencies:
- mdformat-gfm
- mdformat-tables
- mdformat_frontmatter
# - mdformat-toc
# - mdformat-black
# word spelling linter
- repo: https://github.com/codespell-project/codespell
rev: v2.1.0
hooks:
- id: codespell
args:
- --skip=logs/**,data/**,*.ipynb
- --ignore-words-list=hist,circularly,ot
# jupyter notebook cell output clearing
- repo: https://github.com/kynan/nbstripout
rev: 0.5.0
hooks:
- id: nbstripout
# jupyter notebook linting
- repo: https://github.com/nbQA-dev/nbQA
rev: 1.4.0
hooks:
- id: nbqa-black
args: ["--line-length=99"]
- id: nbqa-isort
args: ["--profile=black"]
- id: nbqa-flake8
args:
[
"--extend-ignore=E203,E402,E501,F401,F841",
"--exclude=logs/*,data/*",
]