.gitignore

.classpath
.project
.factorypath
.settings/
/.pydevproject
/listserv/
/log4j.properties
/vcell_debug_server.properties
/vcell_localClient.properties
/vfrapPaper/
jsbml.log
target/
*.pyc
*.so
*.so.*
*.dll
*.dylib
*.exe
*_x64
testzip
ziptool
.idea
.vagrant
/update/
/.checksums
/.DS_Store
vcell-client/UserDocumentation/originalXML/helpSearchConfig.txt
*.iml
.metadata/

### Eclipse ###
.metadata
bin/
tmp/
*.tmp
*.bak
*.swp
*~.nib
local.properties
.settings/
.loadpath
.recommenders

# External tool builders
.externalToolBuilders/

# Locally stored "Eclipse launch configurations"
*.launch

# PyDev specific (Python IDE for Eclipse)
*.pydevproject

# CDT-specific (C/C++ Development Tooling)
.cproject

# CDT- autotools
.autotools

# Java annotation processor (APT)
.factorypath

# PDT-specific (PHP Development Tools)
.buildpath

# sbteclipse plugin
.target

# Tern plugin
.tern-project

# TeXlipse plugin
.texlipse

# STS (Spring Tool Suite)
.springBeans

# Code Recommenders
.recommenders/

# Annotation Processing
.apt_generated/

# Scala IDE specific (Scala & Java development for Eclipse)
.cache-main
.scala_dependencies
.worksheet

### Eclipse Patch ###
# Eclipse Core
.project

# JDT-specific (Eclipse Java Development Tools)
.classpath

# Annotation Processing
.apt_generated

.sts4-cache/

### Java ###
# Compiled class file
*.class

# Log file
*.log

# BlueJ files
*.ctxt

# Mobile Tools for Java (J2ME)
.mtj.tmp/

# Package Files #
*.jar
*.war
*.nar
*.ear
*.zip
*.tar.gz
*.rar

# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
hs_err_pid*

### macOS ###
# General
.DS_Store
.AppleDouble
.LSOverride

# Icon must end with two \r
Icon

# Thumbnails
._*

# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent

# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk

### VisualStudioCode ###
.vscode/*
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json

### VisualStudioCode Patch ###
# Ignore all local history of files
.history

### envFile and Output file ###
# Ignore all local .env and generated output file
.env
sample_model/out

### Windows ###
# Windows thumbnail cache files
Thumbs.db
Thumbs.db:encryptable
ehthumbs.db
ehthumbs_vista.db

# Dump file
*.stackdump

# Folder config file
[Dd]esktop.ini

# Recycle Bin used on file shares
$RECYCLE.BIN/

# Windows Installer files
*.cab
*.msi
*.msix
*.msm
*.msp

# Windows shortcuts
*.lnk
/tests/results/