From 2d422aff4ccc4c86856c0a9900027975dd23e41e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Cl=C3=A9ment=20Robert?= Date: Mon, 16 Dec 2024 16:32:06 +0100 Subject: [PATCH] TST: rewrite testing workflows around uv.lock --- .github/dependabot.yml | 9 - .github/workflows/bleeding-edge.yml | 24 +- .github/workflows/ci.yml | 107 +- .pre-commit-config.yaml | 5 + .readthedocs.yaml | 2 +- requirements/docs.txt => docs/requirements.in | 0 docs/requirements.txt | 109 ++ pyproject.toml | 26 + requirements/tests_all.txt | 6 - requirements/tests_min.txt | 4 - requirements/typecheck.txt | 2 - uv.lock | 1367 +++++++++++++++++ 12 files changed, 1549 insertions(+), 112 deletions(-) rename requirements/docs.txt => docs/requirements.in (100%) create mode 100644 docs/requirements.txt delete mode 100644 requirements/tests_all.txt delete mode 100644 requirements/tests_min.txt delete mode 100644 requirements/typecheck.txt create mode 100644 uv.lock diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 7b899ce3..aa86c933 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -3,15 +3,6 @@ version: 2 updates: -- package-ecosystem: pip - directory: /requirements - schedule: - interval: monthly - groups: - actions: - patterns: - - '*' - - package-ecosystem: github-actions directory: /.github/workflows schedule: diff --git a/.github/workflows/bleeding-edge.yml b/.github/workflows/bleeding-edge.yml index 2e2e0667..1093aca5 100644 --- a/.github/workflows/bleeding-edge.yml +++ b/.github/workflows/bleeding-edge.yml @@ -34,23 +34,15 @@ jobs: with: python-version: 3.13-dev - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 - with: - enable-cache: true - cache-dependency-glob: | - **/requirements/test_all.txt - **/pyproject.toml - - - name: Build + - name: Configure uv run: | - uv venv - uv pip install numpy matplotlib scipy --pre --no-build --extra-index-url \ - https://pypi.anaconda.org/scientific-python-nightly-wheels/simple - uv pip install . - uv pip install --requirement requirements/tests_all.txt - - - run: uv pip list + echo "UV_PYTHON_PREFERENCE=only-system" >> $GITHUB_ENV + pin=${{ matrix.python-version }} + echo "UV_PYTHON=${pin%-dev}" >> $GITHUB_ENV + echo "UV_PRERELEASE=allow" >> $GITHUB_ENV + echo "UV_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" >> $GITHUB_ENV - name: Run pytest run: | - source .venv/bin/activate - pytest --color=yes -ra + uv run --no-editable --all-extras --group test \ + pytest --color=yes diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 60174dc4..95ec3a1c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -27,60 +27,41 @@ jobs: - '3.11' - '3.12' - '3.13' - venv-loc: [bin] + label: [''] include: - os: ubuntu-20.04 python-version: '3.9' - venv-loc: bin - deps: minimal + label: (oldest deps, mininmal) install-args: --resolution=lowest-direct + - os: ubuntu-20.04 + python-version: '3.9' + label: (oldest deps, full) + install-args: --resolution=lowest-direct --all-extras --compile-bytecode + - os: ubuntu-latest + python-version: '3.13' + install-args: --all-extras + label: (full) - os: macos-latest python-version: '3.13' - venv-loc: bin - os: windows-latest python-version: '3.13' - venv-loc: Scripts + name: ${{ matrix.os }}-py${{ matrix.python-version }} ${{ matrix.label }} runs-on: ${{ matrix.os }} - env: - TEST_REQ_FILE: ${{ matrix.deps == 'minimal' && 'requirements/tests_min.txt' || 'requirements/tests_all.txt' }} steps: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - name: Setup Python - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 - with: - python-version: ${{ matrix.python-version }} - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 with: - enable-cache: true - cache-dependency-glob: | - **/requirements/*.txt - **/pyproject.toml - - # could in principle be done through uv sync but - # env resolution appears buggy as of uv 0.4.20 - - run: | - uv venv - uv pip install . ${{ matrix.install-args }} - - - name: Install test dependencies (UNIX) - if: matrix.os != 'windows-latest' - run: uv pip install --requirement $TEST_REQ_FILE - - - name: Install test dependencies (Windows) - if: matrix.os == 'windows-latest' - run: uv pip install --requirement $env:TEST_REQ_FILE - - - run: uv pip list + python-version: ${{ matrix.python-version }} - name: Run pytest shell: bash # could in principle be done through uv run coverage # but env resolution appears buggy as of uv 0.4.20 run: | - source .venv/${{matrix.venv-loc}}/activate - coverage run --parallel-mode -m pytest --color=yes + uv run --no-editable --group covcheck ${{ matrix.install-args }} \ + coverage run --parallel-mode -m pytest --color=yes - name: Upload coverage data # only using reports from ubuntu because @@ -88,7 +69,7 @@ jobs: if: startsWith(matrix.os, 'ubuntu') uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3 with: - name: nonos_coverage_data-${{ matrix.os }}-${{ matrix.python-version }} + name: nonos_coverage_data-${{ matrix.os }}-${{ matrix.python-version }}${{ matrix.label }} path: .coverage.* if-no-files-found: ignore include-hidden-files: true @@ -108,20 +89,13 @@ jobs: steps: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - name: Setup Python - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 - with: - python-version: ${{ matrix.python-version }} - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 with: - enable-cache: true - cache-dependency-glob: | - **/requirements/typecheck.txt - **/pyproject.toml + python-version: ${{ matrix.python-version }} - - name: Run mypy + - name: Typecheck run: | - uvx --with-requirements=requirements/typecheck.txt --with . mypy nonos tests + uv run --frozen --no-editable --group typecheck mypy nonos tests image-tests: name: Image tests @@ -129,36 +103,25 @@ jobs: steps: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - name: Set up Python - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 - with: - python-version: 3.x - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 with: - enable-cache: true - cache-dependency-glob: | - **/requirements/tests_min.txt - **/pyproject.toml - - - name: Build - run: | - uv sync - uv pip install --requirement requirements/tests_min.txt + python-version: '3.13' - - run: uv pip list - name: Run Image Tests run: | - uv run pytest --color=yes --mpl -m mpl_image_compare \ - --mpl-generate-summary=html \ - --mpl-results-path=nonos_pytest_mpl_results \ - --mpl-baseline-path=tests/pytest_mpl_baseline + uv run --frozen --no-editable --group test \ + pytest --color=yes --mpl -m mpl_image_compare \ + --mpl-generate-summary=html \ + --mpl-results-path=nonos_pytest_mpl_results \ + --mpl-baseline-path=tests/pytest_mpl_baseline - name: Generate new image baseline if: failure() run: | - uv run pytest --color=yes --mpl -m mpl_image_compare \ - --mpl-generate-path=nonos_pytest_mpl_new_baseline \ - --last-failed + uv run --frozen --no-editable --group test \ + pytest --color=yes --mpl -m mpl_image_compare \ + --mpl-generate-path=nonos_pytest_mpl_new_baseline \ + --last-failed # always attempt to upload artifacts, even # (and especially) in case of failure. @@ -185,9 +148,11 @@ jobs: steps: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 + with: + # Use latest Python, so it understands all syntax. + python-version: '3.13' - # Use latest Python, so it understands all syntax. - - run: uv tool install --python 3.13 coverage + - run: uv tool install coverage - uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8 with: @@ -218,15 +183,9 @@ jobs: steps: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0 - with: - enable-cache: true - cache-dependency-glob: | - **/requirements/docs.txt - **/pyproject.toml - - name: Build run: | - uvx --with-requirements=requirements/docs.txt mkdocs build + uvx --with-requirements=docs/requirements.txt mkdocs build - name: Upload artifacts uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3 with: diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9b54aadb..92a3c695 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,6 +13,11 @@ repos: - id: end-of-file-fixer - id: check-toml +- repo: https://github.com/astral-sh/uv-pre-commit + rev: 0.5.8 + hooks: + - id: uv-lock + - repo: https://github.com/crate-ci/typos rev: v1.26.0 hooks: diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 66aa1fae..c5f4fbd3 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -19,4 +19,4 @@ mkdocs: # Optionally declare the Python requirements required to build your docs python: install: - - requirements: requirements/docs.txt + - requirements: docs/requirements.txt diff --git a/requirements/docs.txt b/docs/requirements.in similarity index 100% rename from requirements/docs.txt rename to docs/requirements.in diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 00000000..02432b3a --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,109 @@ +# This file was autogenerated by uv via the following command: +# uv pip compile docs/requirements.in +babel==2.16.0 + # via mkdocs-material +bracex==2.5.post1 + # via wcmatch +certifi==2024.12.14 + # via requests +charset-normalizer==3.4.0 + # via requests +click==8.1.7 + # via + # mkdocs + # mkdocstrings +colorama==0.4.6 + # via + # griffe + # mkdocs-material +ghp-import==2.1.0 + # via mkdocs +griffe==1.5.1 + # via mkdocstrings-python +idna==3.10 + # via requests +jinja2==3.1.4 + # via + # mkdocs + # mkdocs-material + # mkdocstrings +markdown==3.7 + # via + # mkdocs + # mkdocs-autorefs + # mkdocs-material + # mkdocstrings + # pymdown-extensions +markupsafe==3.0.2 + # via + # jinja2 + # mkdocs + # mkdocs-autorefs + # mkdocstrings +mergedeep==1.3.4 + # via + # mkdocs + # mkdocs-get-deps +mkdocs==1.6.1 + # via + # -r docs/requirements.in + # mkdocs-autorefs + # mkdocs-include-markdown-plugin + # mkdocs-material + # mkdocstrings +mkdocs-autorefs==1.2.0 + # via + # mkdocstrings + # mkdocstrings-python +mkdocs-get-deps==0.2.0 + # via mkdocs +mkdocs-include-markdown-plugin==7.1.2 + # via -r docs/requirements.in +mkdocs-material==9.5.47 + # via -r docs/requirements.in +mkdocs-material-extensions==1.3.1 + # via mkdocs-material +mkdocstrings==0.27.0 + # via + # -r docs/requirements.in + # mkdocstrings-python +mkdocstrings-python==1.12.2 + # via mkdocstrings +packaging==24.2 + # via mkdocs +paginate==0.5.7 + # via mkdocs-material +pathspec==0.12.1 + # via mkdocs +platformdirs==4.3.6 + # via + # mkdocs-get-deps + # mkdocstrings +pygments==2.18.0 + # via mkdocs-material +pymdown-extensions==10.12 + # via + # mkdocs-material + # mkdocstrings +python-dateutil==2.9.0.post0 + # via ghp-import +pyyaml==6.0.2 + # via + # mkdocs + # mkdocs-get-deps + # pymdown-extensions + # pyyaml-env-tag +pyyaml-env-tag==0.1 + # via mkdocs +regex==2024.11.6 + # via mkdocs-material +requests==2.32.3 + # via mkdocs-material +six==1.17.0 + # via python-dateutil +urllib3==2.2.3 + # via requests +watchdog==6.0.0 + # via mkdocs +wcmatch==10.0 + # via mkdocs-include-markdown-plugin diff --git a/pyproject.toml b/pyproject.toml index 39b57f9f..84371e9f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30,6 +30,14 @@ dependencies = [ "typing_extensions >= 4.4.0 ; python_version < '3.12'", ] +[project.optional-dependencies] +all = [ + "cblind>=2.3.0", + "cmocean>=3.0.3", + "cmyt>=2.0.0", + "lick>=0.5.1", +] + [project.license] text = "GPL-3.0" @@ -43,6 +51,23 @@ nonos = "nonos.main:main" [project.urls] Homepage = "https://github.com/volodia99/nonos" +[dependency-groups] +test = [ + "cogapp>=3.3.0", + "pytest-mpl>=0.15.1", + "pytest>=6.1.0", + +] +covcheck = [ + {include-group = "test"}, + "coverage[toml]>=7.4.4 ; python_full_version < '3.11'", + "coverage>=7.4.4 ; python_full_version >= '3.11'", +] +typecheck = [ + "matplotlib>=3.8.0", + "mypy>=1.13.0", +] + [tool.hatch.build.targets.sdist] exclude = [ "tests", @@ -81,6 +106,7 @@ select = [ combine-as-imports = true [tool.pytest.ini_options] +addopts = "-ra" filterwarnings = [ "error", 'ignore:datetime\.datetime\.utcfromtimestamp\(\) is deprecated:DeprecationWarning', # https://github.com/dateutil/dateutil/pull/1285 diff --git a/requirements/tests_all.txt b/requirements/tests_all.txt deleted file mode 100644 index be3d7b59..00000000 --- a/requirements/tests_all.txt +++ /dev/null @@ -1,6 +0,0 @@ --r tests_min.txt -cblind>=2.3.0 -cmocean>=3.0.3 -cmyt>=2.0.0 -lick>=0.5.1 -numexpr>=2.8.3 diff --git 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