DESCRIPTION

Package: chipenrich
Type: Package
Title: Gene Set Enrichment For ChIP-seq Peak Data
Version: 1.11.4
Date: 2016-08-26
Authors@R: c(
	person(c("Ryan","P."),"Welch",role = c("aut","cph"),email = "welchr@umich.edu"),
	person("Chee","Lee",role = c("aut"),email = "cheelee@umich.edu"),
	person(c("Raymond","G."),"Cavalcante",role = c("aut","cre"),email = "rcavalca@umich.edu"),
	person(c("Laura","J."),"Scott",role = c("ths"), email = "ljst@umich.edu"),
	person(c("Maureen","A."),"Sartor",role = c("ths"),email = "sartorma@med.umich.edu"))
Description: ChIP-Enrich performs gene set enrichment testing
    using peaks called from a ChIP-seq experiment. The method empirically
    corrects for confounding factors such as the length of genes,
    and the mappability of the sequence surrounding genes.
biocViews: Software, Bioinformatics, Enrichment, GeneSetEnrichment
License: GPL-3
Imports:
    chipenrich.data,
    GenomeInfoDb,
    GenomicRanges,
    grid,
    IRanges,
    lattice,
    latticeExtra,
    methods,
    mgcv,
    parallel,
    plyr,
    rms,
    S4Vectors,
    stringr
Suggests:
    BiocStyle,
    devtools,
    knitr,
    rmarkdown,
    roxygen2,
    testthat
Depends:
    R (>= 3.1.0)
LazyLoad: yes
Maintainer: Raymond G. Cavalcante <rcavalca@umich.edu>
RoxygenNote: 5.0.1
VignetteBuilder: knitr
Collate:
    'assign_peaks.R'
    'test_gam.R'
    'test_fisher.R'
    'test_binomial.R'
    'test_approx.R'
    'peaks_per_gene.R'
    'read.R'
    'randomize.R'
    'setup.R'
    'supported.R'
    'utils.R'
    'constants.R'
    'plot_spline_length.R'
    'plot_gene_coverage.R'
    'plot_dist_to_tss.R'
    'chipenrich.R'
    'chipenrich_package_doc.R'