diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index a8105d2..d1d73e5 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -21,12 +21,12 @@ jobs: - name: Check validity of traces run: | find . -type f -name "*.json" > traces.txt && err=0 - git clone https://github.com/workflowhub/workflow-schema + git clone https://github.com/wfcommons/workflow-schema err_report() { echo "Error on trace file $1" } trap 'err_report ${trace_file}' ERR; for trace_file in `cat traces.txt`; do - python3 ./workflow-schema/workflowhub-validator.py -d ${trace_file}; + python3 ./workflow-schema/wfcommons-validator.py -d ${trace_file}; echo ""; done diff --git a/1000genome/README.md b/1000genome/README.md index 89ca837..7d38e42 100644 --- a/1000genome/README.md +++ b/1000genome/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for 1000Genome Workflow @@ -45,7 +45,7 @@ performance metrics can be found in the following research publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) for +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/README.md b/README.md index 8fd1ed7..5dbaf58 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ -![Build](https://github.com/workflowhub/pegasus-traces/workflows/Build/badge.svg) +![Build](https://github.com/wfcommons/pegasus-traces/workflows/Build/badge.svg) - + @@ -9,7 +9,7 @@ This repository contains workflow execution traces generated from [Pegasus](http://pegasus.isi.edu) workflow executions. The traces hosted in this repository use the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. #### Repository Structure @@ -22,8 +22,8 @@ _computing platforms_. #### Workflow Simulator The execution traces provided in this repository are compatible to any -[simulator framework](https://workflowhub.org/simulator.html) that implements -the [WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema). +[simulator framework](https://wfcommons.org/simulators) that implements +the [WfCommons JSON format](https://github.com/wfcommons/workflow-schema). ## Summary of Workflow Execution Traces diff --git a/cycles/README.md b/cycles/README.md index d3b6025..b938b70 100644 --- a/cycles/README.md +++ b/cycles/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for Cycles Workflow @@ -43,7 +43,7 @@ performance metrics can be found in the following research publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/epigenomics/README.md b/epigenomics/README.md index f484cdb..83e04b6 100644 --- a/epigenomics/README.md +++ b/epigenomics/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for Epigenomics Workflow @@ -41,7 +41,7 @@ performance metrics can be found in the following research publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/montage/README.md b/montage/README.md index 517f5f4..398d8ba 100644 --- a/montage/README.md +++ b/montage/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for Montage Workflow @@ -45,7 +45,7 @@ performance metrics can be found in the following research publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) for +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/seismology/README.md b/seismology/README.md index 24de512..9e1a7da 100644 --- a/seismology/README.md +++ b/seismology/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for Seismic Cross Correlation Workflow @@ -37,7 +37,7 @@ publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/soykb/README.md b/soykb/README.md index 8ca680d..40695bd 100644 --- a/soykb/README.md +++ b/soykb/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for Soybean Workflow (SoyKB) @@ -48,7 +48,7 @@ performance metrics can be found in the following research publication: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders. diff --git a/srasearch/README.md b/srasearch/README.md index b17db72..967e617 100644 --- a/srasearch/README.md +++ b/srasearch/README.md @@ -1,4 +1,4 @@ - + # Execution Traces for SRA Search Workflow @@ -27,7 +27,7 @@ The figure below shows an overview of the SRA Search workflow structure: ## Execution Traces Execution traces are formatted according to the -[WorkflowHub JSON format](https://github.com/workflowhub/workflow-schema) for +[WfCommons JSON format](https://github.com/wfcommons/workflow-schema) for describing workflow executions. Execution traces from different computing platforms are organized into sub-folders.