Extract_CCregions.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import Bio.PDB as PDB\n",
    "import os\n",
    "import itertools\n",
    "import json\n",
    "\n",
    "##This script inputs the coiled coil JSON dictionary from SOCKET_extract-CCregions.ipynb and the corresponding PDB\n",
    "##files and outputs a directory of coiled coil regions pdb files. Biological units may not contain the CC region \n",
    "##which results in empty pdb files.\n",
    "\n",
    "p = PDB.PDBParser()\n",
    "parent_directory  = \"./\"\n",
    "pdb_file_directory = parent_directory+\"Complete_biological_units/\"\n",
    "save_file_directory = parent_directory+\"Complete_biological_units_CC/\"\n",
    "cc_region_dict_directory = parent_directory+\"CCregions2020.json\"\n",
    "\n",
    "with open(cc_region_dict_directory) as json_file: \n",
    "    allpdb_cc_regions = json.load(json_file) \n",
    "\n",
    "class TyrSelect(PDB.Select):\n",
    "    def accept_residue(self, residue):\n",
    "        cc_residues = allpdb_cc_regions[residue.full_id[0][0:4]]\n",
    "        for cc_regions in cc_residues:\n",
    "            if residue.full_id[2] == cc_regions[0]:\n",
    "                if residue.full_id[3][1] in list(range(int(cc_regions[1]),int(cc_regions[2]))):\n",
    "                    return 1\n",
    "        else:\n",
    "            return 0"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5l4k.pdb1\n",
      "5och.pdb3\n",
      "1nf6.pdb1\n",
      "3zx6.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 10199.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 10203.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 10234.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 10237.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain O is discontinuous at line 2356.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain P is discontinuous at line 2367.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4iwb.pdb1\n",
      "1au1.pdb1\n",
      "1sed.pdb1\n",
      "4gz5.pdb2\n",
      "6pbn.pdb1\n",
      "4pac.pdb1\n",
      "4boj.pdb1\n",
      "2pfm.pdb1\n",
      "3oaa.pdb4\n",
      "5ikh.pdb1\n",
      "3otn.pdb3\n",
      "3hl1.pdb2\n",
      "1dto.pdb1\n",
      "3kbu.pdb2\n",
      "3bhp.pdb1\n",
      "4zey.pdb2\n",
      "3b13.pdb1\n",
      "2odv.pdb1\n",
      "3oaa.pdb3\n",
      "2b5u.pdb2\n",
      "6ro1.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 67079.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 67138.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 67197.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 67256.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 67259.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 100438.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 100497.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 100556.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 100615.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 100618.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 133797.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 133856.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 133915.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 133974.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 133977.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4kbq.pdb2\n",
      "5och.pdb4\n",
      "1m1j.pdb1\n",
      "3r9m.pdb1\n",
      "6aki.pdb1\n",
      "2v0o.pdb1\n",
      "6tb2.pdb1\n",
      "5jv3.pdb2\n",
      "6s7p.pdb1\n",
      "4z6g.pdb1\n",
      "1rj2.pdb1\n",
      "6djl.pdb1\n",
      "3ayf.pdb2\n",
      "6bfi.pdb1\n",
      "3pvy.pdb2\n",
      "4ag6.pdb1\n",
      "6qb5.pdb4\n",
      "2bbj.pdb1\n",
      "4jek.pdb2\n",
      "1b71.pdb2\n",
      "6qle.pdb1\n",
      "2luh.pdb1\n",
      "3cht.pdb1\n",
      "5k9l.pdb1\n",
      "2e7s.pdb1\n",
      "5wpn.pdb1\n",
      "2ijj.pdb1\n",
      "2yy0.pdb3\n",
      "3uq7.pdb1\n",
      "5vvr.pdb1\n",
      "5nnp.pdb2\n",
      "4jjj.pdb1\n",
      "1rp4.pdb1\n",
      "3vv9.pdb1\n",
      "5w5h.pdb1\n",
      "6qb5.pdb3\n",
      "4k2p.pdb1\n",
      "3ebi.pdb1\n",
      "6ao3.pdb1\n",
      "4i0u.pdb2\n",
      "5mqi.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 3212.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 3326.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 3337.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 3469.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 5302.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 5305.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 3213.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 3322.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 3333.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 3463.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4jq5.pdb3\n",
      "5yfb.pdb2\n",
      "6pwi.pdb2\n",
      "3u0c.pdb2\n",
      "3hym.pdb1\n",
      "3flv.pdb1\n",
      "2z5h.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 2299.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 2319.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 2275.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 2289.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 10273.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 10275.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 10307.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 10312.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4doy.pdb1\n",
      "6gpz.pdb1\n",
      "5hzj.pdb2\n",
      "2b90.pdb1\n",
      "2f66.pdb2\n",
      "4q85.pdb3\n",
      "5o5l.pdb3\n",
      "4rfx.pdb3\n",
      "6fel.pdb2\n",
      "6m97.pdb1\n",
      "3vkg.pdb2\n",
      "5nvr.pdb1\n",
      "3twe.pdb1\n",
      "1nzn.pdb2\n",
      "3b60.pdb2\n",
      "6cby.pdb1\n",
      "6u5o.pdb1\n",
      "5jo7.pdb1\n",
      "6azr.pdb1\n",
      "2qlz.pdb2\n",
      "1skv.pdb2\n",
      "6cno.pdb1\n",
      "4d6t.pdb1\n",
      "5ic1.pdb1\n",
      "4mt4.pdb1\n",
      "6azv.pdb4\n",
      "4djk.pdb1\n",
      "5jke.pdb2\n",
      "4n83.pdb1\n",
      "5jvu.pdb1\n",
      "2lpz.pdb1\n",
      "4hzk.pdb2\n",
      "5y05.pdb1\n",
      "6fnd.pdb2\n",
      "4kjs.pdb2\n",
      "3nf1.pdb1\n",
      "3ez0.pdb2\n",
      "4q85.pdb4\n",
      "5o5l.pdb4\n",
      "3qf7.pdb3\n",
      "5xdb.pdb1\n",
      "6azv.pdb3\n",
      "3k9i.pdb1\n",
      "2dx1.pdb1\n",
      "6u3w.pdb1\n",
      "5gnj.pdb4\n",
      "4xif.pdb1\n",
      "5ldw.pdb1\n",
      "4p3f.pdb1\n",
      "5amb.pdb1\n",
      "2yjm.pdb1\n",
      "2ec5.pdb1\n",
      "2oto.pdb3\n",
      "5upo.pdb1\n",
      "3h6p.pdb1\n",
      "5ot4.pdb1\n",
      "1nt2.pdb1\n",
      "6q45.pdb1\n",
      "3nkz.pdb1\n",
      "6qj3.pdb1\n",
      "5jkm.pdb1\n",
      "4c91.pdb1\n",
      "5np1.pdb1\n",
      "2vf8.pdb2\n",
      "5eas.pdb1\n",
      "2aqx.pdb1\n",
      "2hsb.pdb1\n",
      "4jdx.pdb2\n",
      "4j96.pdb3\n",
      "2lxm.pdb1\n",
      "3cyo.pdb1\n",
      "5gnj.pdb3\n",
      "5a6c.pdb1\n",
      "2dxb.pdb2\n",
      "5e3c.pdb1\n",
      "3pw1.pdb2\n",
      "6csw.pdb1\n",
      "3iqc.pdb2\n",
      "5gip.pdb1\n",
      "4ui9.pdb1\n",
      "6qb5.pdb2\n",
      "3qbp.pdb1\n",
      "1p5q.pdb1\n",
      "1tr2.pdb1\n",
      "4ce7.pdb1\n",
      "4lle.pdb2\n",
      "5fvl.pdb1\n",
      "2pjw.pdb1\n",
      "4u6s.pdb2\n",
      "2f66.pdb3\n",
      "4wzx.pdb1\n",
      "4jq5.pdb2\n",
      "5nl6.pdb1\n",
      "3wmj.pdb1\n",
      "2yfb.pdb1\n",
      "3odn.pdb1\n",
      "4abn.pdb2\n",
      "3ubw.pdb1\n",
      "1fio.pdb1\n",
      "3j9t.pdb1\n",
      "3jq1.pdb2\n",
      "2nrn.pdb1\n",
      "3oja.pdb1\n",
      "5cbf.pdb1\n",
      "5c6f.pdb2\n",
      "6c3o.pdb1\n",
      "2yy0.pdb2\n",
      "3q15.pdb2\n",
      "6kw3.pdb1\n",
      "3t49.pdb1\n",
      "3wuu.pdb1\n",
      "4gz5.pdb4\n",
      "4l0r.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 3207.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 3326.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 3337.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 3470.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4445.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 4460.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 4465.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 4473.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4477.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 4485.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 8830.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 8845.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 8850.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 8858.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 8862.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 8870.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3oaa.pdb2\n",
      "2p22.pdb1\n",
      "2pnv.pdb1\n",
      "3hnw.pdb1\n",
      "1p32.pdb1\n",
      "4ckk.pdb2\n",
      "2qv6.pdb1\n",
      "6sct.pdb1\n",
      "3rqw.pdb1\n",
      "2a3q.pdb2\n",
      "5och.pdb2\n",
      "5mk0.pdb2\n",
      "4gz5.pdb3\n",
      "5duo.pdb2\n",
      "5wem.pdb1\n",
      "3otn.pdb2\n",
      "2ymb.pdb2\n",
      "2awy.pdb1\n",
      "6bmm.pdb1\n",
      "4h9q.pdb1\n",
      "4j96.pdb2\n",
      "4uzy.pdb1\n",
      "4jdx.pdb3\n",
      "4g63.pdb1\n",
      "5gnj.pdb2\n",
      "5nfv.pdb1\n",
      "2vf8.pdb3\n",
      "5dh1.pdb1\n",
      "5j1f.pdb1\n",
      "5zi1.pdb1\n",
      "5z7l.pdb1\n",
      "6pfv.pdb1\n",
      "4u4w.pdb1\n",
      "5cwt.pdb2\n",
      "6cnc.pdb1\n",
      "3iqc.pdb3\n",
      "4wpc.pdb1\n",
      "5aio.pdb1\n",
      "5vju.pdb1\n",
      "1ggq.pdb1\n",
      "2oto.pdb2\n",
      "6qe6.pdb1\n",
      "1lm3.pdb1\n",
      "1sf9.pdb1\n",
      "5e75.pdb1\n",
      "4k84.pdb2\n",
      "3c3l.pdb1\n",
      "6gbr.pdb1\n",
      "3seo.pdb1\n",
      "5hfm.pdb2\n",
      "5hyl.pdb2\n",
      "5j9q.pdb1\n",
      "6i8a.pdb1\n",
      "2xze.pdb2\n",
      "1dh3.pdb1\n",
      "1c1g.pdb1\n",
      "3hd7.pdb1\n",
      "4k34.pdb1\n",
      "4xwm.pdb1\n",
      "6azv.pdb2\n",
      "4xks.pdb1\n",
      "1ory.pdb1\n",
      "3qf7.pdb2\n",
      "5zxd.pdb1\n",
      "5lm1.pdb1\n",
      "1rtw.pdb1\n",
      "5uae.pdb2\n",
      "2d4y.pdb2\n",
      "4rfx.pdb2\n",
      "4doh.pdb2\n",
      "5o5l.pdb2\n",
      "6kk8.pdb1\n",
      "4q85.pdb2\n",
      "5m72.pdb1\n",
      "3vkg.pdb3\n",
      "2fjc.pdb1\n",
      "1z0p.pdb1\n",
      "1lkp.pdb1\n",
      "3vp8.pdb1\n",
      "3hiu.pdb2\n",
      "3n24.pdb1\n",
      "5j9t.pdb3\n",
      "6ar7.pdb3\n",
      "5jvp.pdb2\n",
      "3wfv.pdb1\n",
      "3vp9.pdb1\n",
      "1gu2.pdb2\n",
      "5mnt.pdb3\n",
      "3k1s.pdb1\n",
      "6q56.pdb2\n",
      "2r9a.pdb1\n",
      "3qku.pdb1\n",
      "6nq8.pdb3\n",
      "1qz2.pdb1\n",
      "4h6y.pdb1\n",
      "2quf.pdb1\n",
      "3o0z.pdb2\n",
      "3lof.pdb3\n",
      "5o01.pdb2\n",
      "5od1.pdb1\n",
      "3a8q.pdb1\n",
      "5h7c.pdb2\n",
      "6fkf.pdb1\n",
      "6ar7.pdb4\n",
      "5n5e.pdb3\n",
      "5xua.pdb1\n",
      "4j7k.pdb1\n",
      "4l2w.pdb2\n",
      "1ii8.pdb2\n",
      "4zog.pdb1\n",
      "5v87.pdb2\n",
      "6nq8.pdb4\n",
      "5xei.pdb1\n",
      "5mnt.pdb4\n",
      "5f8v.pdb1\n",
      "2v7i.pdb1\n",
      "2gyq.pdb1\n",
      "3he4.pdb4\n",
      "5ew5.pdb1\n",
      "2zuq.pdb1\n",
      "3t6g.pdb2\n",
      "2ke4.pdb1\n",
      "1x8z.pdb2\n",
      "3rdh.pdb3\n",
      "4cvo.pdb1\n",
      "1wc8.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 5911.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 5242.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 5244.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 5246.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 5287.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 9728.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 9730.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 9732.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 9773.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 14214.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 14216.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 14218.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 14259.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4kpp.pdb1\n",
      "6rw6.pdb1\n",
      "1l2a.pdb2\n",
      ".DS_Store\n",
      "3rfu.pdb1\n",
      "5wlh.pdb1\n",
      "4u4v.pdb1\n",
      "6l30.pdb1\n",
      "3he4.pdb3\n",
      "1r5q.pdb1\n",
      "3ug7.pdb2\n",
      "3v1e.pdb1\n",
      "1wfd.pdb1\n",
      "2f1k.pdb2\n",
      "6inq.pdb1\n",
      "4j97.pdb2\n",
      "4wne.pdb1\n",
      "3phf.pdb2\n",
      "6jpf.pdb1\n",
      "5wpv.pdb1\n",
      "6pzi.pdb1\n",
      "6gys.pdb1\n",
      "5uz7.pdb1\n",
      "4elz.pdb1\n",
      "6gql.pdb2\n",
      "5j1g.pdb1\n",
      "1uur.pdb1\n",
      "2yw6.pdb1\n",
      "1kvk.pdb1\n",
      "1e7p.pdb2\n",
      "2zqm.pdb2\n",
      "3vxd.pdb4\n",
      "5jvm.pdb1\n",
      "6bqr.pdb1\n",
      "2xyn.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5278.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5301.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5306.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5406.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 10362.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 10367.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 10385.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 10429.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2f22.pdb1\n",
      "6oh4.pdb1\n",
      "3sr2.pdb3\n",
      "4lgd.pdb1\n",
      "5jxf.pdb4\n",
      "3vxd.pdb3\n",
      "2xfg.pdb1\n",
      "1yc9.pdb1\n",
      "4im2.pdb1\n",
      "3pvt.pdb2\n",
      "2iak.pdb3\n",
      "3v5y.pdb2\n",
      "1ji5.pdb1\n",
      "3l9f.pdb1\n",
      "4b7y.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 19240.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 19294.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 802.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 810.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5jxf.pdb3\n",
      "3c4f.pdb1\n",
      "4c57.pdb2\n",
      "3sr2.pdb4\n",
      "4akv.pdb1\n",
      "5odw.pdb2\n",
      "1lj9.pdb1\n",
      "4jyx.pdb2\n",
      "1xcb.pdb3\n",
      "3stq.pdb3\n",
      "4uel.pdb1\n",
      "1zbt.pdb1\n",
      "5eeb.pdb2\n",
      "5wu7.pdb2\n",
      "3x17.pdb2\n",
      "5oce.pdb4\n",
      "2f6h.pdb1\n",
      "6epc.pdb1\n",
      "3q1o.pdb2\n",
      "1jm0.pdb3\n",
      "3j9u.pdb1\n",
      "3gjo.pdb2\n",
      "3kd7.pdb3\n",
      "2opz.pdb2\n",
      "6cm3.pdb1\n",
      "6rah.pdb1\n",
      "5oce.pdb3\n",
      "3abk.pdb2\n",
      "2pbi.pdb2\n",
      "5ep6.pdb2\n",
      "4cem.pdb1\n",
      "3i0t.pdb1\n",
      "1xcb.pdb4\n",
      "3stq.pdb4\n",
      "5mp9.pdb1\n",
      "2f3o.pdb1\n",
      "4etp.pdb1\n",
      "4hot.pdb1\n",
      "3kd7.pdb4\n",
      "4igg.pdb1\n",
      "1qce.pdb1\n",
      "3q4h.pdb2\n",
      "5xau.pdb2\n",
      "4bxh.pdb1\n",
      "4z4j.pdb1\n",
      "3he4.pdb2\n",
      "5lqy.pdb1\n",
      "4g78.pdb1\n",
      "4aly.pdb2\n",
      "2fzf.pdb1\n",
      "1y8r.pdb2\n",
      "1noh.pdb1\n",
      "4yf1.pdb1\n",
      "2ehg.pdb1\n",
      "1l2a.pdb3\n",
      "4q88.pdb2\n",
      "5u1a.pdb2\n",
      "3ffl.pdb1\n",
      "5t16.pdb1\n",
      "5d7g.pdb1\n",
      "3d0i.pdb1\n",
      "5c05.pdb1\n",
      "5xn6.pdb1\n",
      "4j97.pdb3\n",
      "3dby.pdb1\n",
      "3lji.pdb1\n",
      "1ic2.pdb1\n",
      "1l2a.pdb4\n",
      "5xcu.pdb2\n",
      "6d9f.pdb2\n",
      "1dvb.pdb1\n",
      "2kj1.pdb1\n",
      "6h2f.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5245.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 5247.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5253.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 5363.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 9866.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 9868.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 9874.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 9984.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 14487.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 14489.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 14495.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 14605.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5i7c.pdb1\n",
      "3phf.pdb4\n",
      "3eab.pdb1\n",
      "4j97.pdb4\n",
      "3rdh.pdb2\n",
      "4p3g.pdb1\n",
      "1x8z.pdb3\n",
      "6j4j.pdb1\n",
      "5n5e.pdb2\n",
      "3jck.pdb1\n",
      "1ukl.pdb1\n",
      "3tbk.pdb1\n",
      "3pw8.pdb1\n",
      "5jvp.pdb4\n",
      "1qbz.pdb1\n",
      "4cdr.pdb1\n",
      "6rwa.pdb1\n",
      "6q56.pdb4\n",
      "4apo.pdb1\n",
      "6hc2.pdb1\n",
      "4kjr.pdb2\n",
      "2p7v.pdb1\n",
      "5jvp.pdb3\n",
      "3t9j.pdb1\n",
      "6ar7.pdb2\n",
      "4trg.pdb1\n",
      "3kdy.pdb2\n",
      "6fue.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5339.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 5341.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5343.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 5482.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 10059.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 10061.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 10063.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 10202.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 14779.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 14781.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 14783.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 14922.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "6jtc.pdb2\n",
      "5j9t.pdb2\n",
      "6r2g.pdb1\n",
      "6nq8.pdb2\n",
      "4jav.pdb1\n",
      "5zig.pdb1\n",
      "3lof.pdb2\n",
      "5mnt.pdb2\n",
      "5a7d.pdb1\n",
      "6n7r.pdb1\n",
      "1uru.pdb1\n",
      "6q56.pdb3\n",
      "5d0q.pdb2\n",
      "3c1m.pdb1\n",
      "2pqr.pdb2\n",
      "2h7v.pdb1\n",
      "6a9p.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 4956.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 4957.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 5002.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 5046.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 9721.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 9722.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 9767.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 9811.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 16081.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 16082.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 16083.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 16084.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 16128.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 16172.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 16216.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 22486.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 22487.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 22488.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 22489.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 22533.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 22577.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 22621.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 996.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 1001.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3epy.pdb1\n",
      "6iko.pdb1\n",
      "3fp2.pdb1\n",
      "3auy.pdb1\n",
      "5h07.pdb1\n",
      "3ckb.pdb2\n",
      "5oce.pdb2\n",
      "3d0t.pdb2\n",
      "5dac.pdb1\n",
      "6iuh.pdb1\n",
      "4myc.pdb2\n",
      "2vxx.pdb1\n",
      "4jhr.pdb1\n",
      "3ehn.pdb2\n",
      "4q4h.pdb1\n",
      "5dol.pdb1\n",
      "3lg7.pdb1\n",
      "5ufk.pdb1\n",
      "5zwu.pdb1\n",
      "4pk7.pdb1\n",
      "4jo7.pdb1\n",
      "3stq.pdb2\n",
      "1xcb.pdb2\n",
      "5k7b.pdb1\n",
      "4xk8.pdb2\n",
      "3kd7.pdb2\n",
      "6hd9.pdb1\n",
      "5c76.pdb2\n",
      "1jm0.pdb2\n",
      "3wgi.pdb1\n",
      "3qtm.pdb1\n",
      "6hze.pdb1\n",
      "3q1o.pdb3\n",
      "6f3a.pdb1\n",
      "4qq5.pdb1\n",
      "5zj6.pdb1\n",
      "3v5y.pdb3\n",
      "4x01.pdb1\n",
      "5fcn.pdb1\n",
      "3vxd.pdb2\n",
      "6hed.pdb1\n",
      "5aj3.pdb1\n",
      "2iak.pdb2\n",
      "3ayg.pdb2\n",
      "2y3a.pdb1\n",
      "1z4a.pdb2\n",
      "4h22.pdb2\n",
      "4jyx.pdb3\n",
      "5jxf.pdb2\n",
      "5b83.pdb1\n",
      "3cp1.pdb1\n",
      "2vko.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 6418.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 6423.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 6433.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 6646.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3kbt.pdb2\n",
      "4ry2.pdb1\n",
      "3v5y.pdb4\n",
      "5hyt.pdb2\n",
      "1twg.pdb3\n",
      "6noy.pdb1\n",
      "3aha.pdb1\n",
      "3sr2.pdb2\n",
      "5a3p.pdb1\n",
      "2xyn.pdb3\n",
      "4jyx.pdb4\n",
      "4iyl.pdb1\n",
      "5kc1.pdb1\n",
      "4x5m.pdb1\n",
      "4eve.pdb1\n",
      "4obw.pdb2\n",
      "4n5c.pdb3\n",
      "1wp9.pdb4\n",
      "4w8f.pdb1\n",
      "6h2x.pdb1\n",
      "4ehi.pdb1\n",
      "2idg.pdb2\n",
      "3nmu.pdb2\n",
      "4lfe.pdb1\n",
      "4llc.pdb2\n",
      "2y4t.pdb1\n",
      "4ii4.pdb1\n",
      "1orj.pdb1\n",
      "3r2o.pdb1\n",
      "2p4w.pdb1\n",
      "1f23.pdb1\n",
      "4hwd.pdb2\n",
      "6q6h.pdb1\n",
      "2uw1.pdb1\n",
      "6hzf.pdb2\n",
      "5zzj.pdb3\n",
      "2yfd.pdb1\n",
      "2bbh.pdb2\n",
      "1lt1.pdb2\n",
      "5wjb.pdb1\n",
      "5e57.pdb2\n",
      "2ntx.pdb2\n",
      "4f53.pdb2\n",
      "2q98.pdb1\n",
      "5wa1.pdb1\n",
      "3o6x.pdb1\n",
      "4n5c.pdb4\n",
      "1us6.pdb1\n",
      "5de2.pdb1\n",
      "1wp9.pdb3\n",
      "4jxy.pdb2\n",
      "6rcv.pdb1\n",
      "4di0.pdb1\n",
      "4wfd.pdb3\n",
      "2ql2.pdb3\n",
      "5zzj.pdb4\n",
      "3ksy.pdb1\n",
      "3ehm.pdb1\n",
      "3l4q.pdb1\n",
      "4xng.pdb1\n",
      "5nwk.pdb1\n",
      "5c22.pdb1\n",
      "6epd.pdb1\n",
      "1y1u.pdb1\n",
      "4wba.pdb1\n",
      "5zug.pdb1\n",
      "4on9.pdb1\n",
      "6miz.pdb1\n",
      "3rh3.pdb1\n",
      "5fl7.pdb1\n",
      "2qfc.pdb1\n",
      "5lnf.pdb1\n",
      "2ome.pdb2\n",
      "3r6n.pdb1\n",
      "6gw5.pdb1\n",
      "6fes.pdb2\n",
      "4y1k.pdb2\n",
      "2j2f.pdb2\n",
      "6cyf.pdb1\n",
      "6a1d.pdb1\n",
      "5itc.pdb1\n",
      "3mtt.pdb1\n",
      "4iff.pdb1\n",
      "6nin.pdb3\n",
      "3k1i.pdb2\n",
      "1yv1.pdb1\n",
      "1cnt.pdb1\n",
      "5fcm.pdb2\n",
      "1few.pdb2\n",
      "6aam.pdb1\n",
      "1o1t.pdb1\n",
      "3vtq.pdb1\n",
      "3e0s.pdb1\n",
      "4o9u.pdb1\n",
      "5fi0.pdb1\n",
      "6ps1.pdb1\n",
      "4r61.pdb1\n",
      "4u1c.pdb1\n",
      "2ypa.pdb1\n",
      "4ux9.pdb4\n",
      "6c08.pdb1\n",
      "5udl.pdb1\n",
      "5zur.pdb1\n",
      "2hr5.pdb1\n",
      "3x0x.pdb2\n",
      "2bde.pdb2\n",
      "5tj4.pdb2\n",
      "5vjs.pdb1\n",
      "1upg.pdb1\n",
      "4wpe.pdb1\n",
      "1rw5.pdb1\n",
      "2xz0.pdb1\n",
      "5u1b.pdb1\n",
      "3thf.pdb2\n",
      "3d48.pdb1\n",
      "5zpu.pdb1\n",
      "2gd5.pdb1\n",
      "3p5p.pdb1\n",
      "5uak.pdb1\n",
      "4ux9.pdb3\n",
      "5d90.pdb2\n",
      "1vmg.pdb2\n",
      "4k2o.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 2189.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 2266.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 4100.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4169.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 5051.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 1074.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 1095.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "4h9s.pdb3\n",
      "3csk.pdb1\n",
      "2x7r.pdb2\n",
      "3s9v.pdb1\n",
      "5vmm.pdb1\n",
      "5zhb.pdb2\n",
      "2oa5.pdb1\n",
      "5h3i.pdb4\n",
      "3zd7.pdb1\n",
      "3w54.pdb2\n",
      "5j1h.pdb2\n",
      "4cya.pdb1\n",
      "4dji.pdb2\n",
      "4j98.pdb1\n",
      "1f4m.pdb2\n",
      "5fdn.pdb1\n",
      "1ojh.pdb2\n",
      "5c5b.pdb1\n",
      "1ovv.pdb2\n",
      "5ka6.pdb1\n",
      "6c8t.pdb1\n",
      "6ixf.pdb1\n",
      "2il6.pdb1\n",
      "3wj8.pdb3\n",
      "5yz0.pdb1\n",
      "6djs.pdb1\n",
      "3c23.pdb3\n",
      "6s7o.pdb1\n",
      "4om3.pdb1\n",
      "5h3i.pdb3\n",
      "6nd4.pdb1\n",
      "5n5f.pdb1\n",
      "3i5a.pdb1\n",
      "4u7n.pdb1\n",
      "1nfv.pdb3\n",
      "3i9w.pdb1\n",
      "5cj1.pdb2\n",
      "4yjw.pdb1\n",
      "5v5s.pdb1\n",
      "4gkw.pdb1\n",
      "2wb7.pdb2\n",
      "5vlr.pdb1\n",
      "4g2v.pdb1\n",
      "4j5l.pdb1\n",
      "5amq.pdb1\n",
      "1n86.pdb1\n",
      "1enk.pdb1\n",
      "5yqz.pdb1\n",
      "5ikn.pdb1\n",
      "4bej.pdb2\n",
      "6t9n.pdb1\n",
      "6nin.pdb2\n",
      "5dn6.pdb1\n",
      "6fwf.pdb1\n",
      "5wti.pdb1\n",
      "5ys8.pdb1\n",
      "1yig.pdb1\n",
      "2ome.pdb4\n",
      "6d3r.pdb1\n",
      "6fes.pdb4\n",
      "5dmz.pdb2\n",
      "5ahv.pdb1\n",
      "3ck6.pdb1\n",
      "1bb1.pdb1\n",
      "3pe3.pdb2\n",
      "1fs0.pdb2\n",
      "6fes.pdb3\n",
      "5f5p.pdb2\n",
      "2j2f.pdb3\n",
      "4z8n.pdb1\n",
      "3rqu.pdb2\n",
      "6nf4.pdb1\n",
      "2ome.pdb3\n",
      "5cjs.pdb2\n",
      "2v6y.pdb2\n",
      "1c94.pdb1\n",
      "3e5x.pdb1\n",
      "4jxy.pdb3\n",
      "1wp9.pdb2\n",
      "4jmr.pdb1\n",
      "1fxk.pdb1\n",
      "2idg.pdb4\n",
      "2hn2.pdb1\n",
      "3ajw.pdb2\n",
      "6gy6.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 2189.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 2266.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5z51.pdb1\n",
      "4buj.pdb1\n",
      "6gg1.pdb1\n",
      "6g31.pdb2\n",
      "5mj4.pdb1\n",
      "1lt1.pdb4\n",
      "2ql2.pdb2\n",
      "4wfd.pdb2\n",
      "3klt.pdb1\n",
      "1lj2.pdb1\n",
      "5aww.pdb1\n",
      "2idg.pdb3\n",
      "3nmu.pdb3\n",
      "5ouz.pdb1\n",
      "2yia.pdb1\n",
      "4n5c.pdb2\n",
      "3jqh.pdb1\n",
      "6v00.pdb1\n",
      "3pko.pdb1\n",
      "2hu2.pdb1\n",
      "2qqy.pdb1\n",
      "5zzj.pdb2\n",
      "6r5k.pdb1\n",
      "1lt1.pdb3\n",
      "6quz.pdb1\n",
      "6ejn.pdb1\n",
      "2v4h.pdb1\n",
      "4hny.pdb1\n",
      "4j41.pdb1\n",
      "4hwd.pdb3\n",
      "6b73.pdb2\n",
      "3onj.pdb1\n",
      "6ian.pdb2\n",
      "5xub.pdb2\n",
      "6bhu.pdb1\n",
      "3w5k.pdb1\n",
      "4fla.pdb1\n",
      "5h3i.pdb2\n",
      "1ojh.pdb4\n",
      "5x11.pdb1\n",
      "3bre.pdb1\n",
      "6gcv.pdb2\n",
      "5gza.pdb1\n",
      "3c23.pdb2\n",
      "5l0y.pdb1\n",
      "5cj1.pdb3\n",
      "6p47.pdb1\n",
      "3jr1.pdb2\n",
      "1ovv.pdb4\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 7222.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 7245.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 7253.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 7333.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3nmd.pdb1\n",
      "1nfv.pdb2\n",
      "1f4m.pdb3\n",
      "2jaa.pdb1\n",
      "1na3.pdb2\n",
      "4dji.pdb3\n",
      "1ojh.pdb3\n",
      "1wch.pdb1\n",
      "3w54.pdb3\n",
      "6rgn.pdb1\n",
      "4it5.pdb1\n",
      "3wj8.pdb2\n",
      "2frv.pdb1\n",
      "1ovv.pdb3\n",
      "3aqb.pdb2\n",
      "1ec5.pdb1\n",
      "2dfk.pdb1\n",
      "5cj1.pdb4\n",
      "4a2p.pdb1\n",
      "1jqo.pdb1\n",
      "2o1k.pdb1\n",
      "4ux9.pdb2\n",
      "5g05.pdb1\n",
      "4ox0.pdb1\n",
      "6nq7.pdb1\n",
      "2j0n.pdb1\n",
      "5lhg.pdb1\n",
      "3nym.pdb1\n",
      "6rx4.pdb1\n",
      "2x7r.pdb3\n",
      "1lf9.pdb2\n",
      "2hv8.pdb1\n",
      "6inr.pdb2\n",
      "5tj4.pdb4\n",
      "4h9s.pdb2\n",
      "5wme.pdb1\n",
      "5d5y.pdb1\n",
      "4hvs.pdb1\n",
      "1jth.pdb1\n",
      "1r8j.pdb1\n",
      "5mw9.pdb1\n",
      "3wjk.pdb1\n",
      "4tma.pdb1\n",
      "4lwz.pdb2\n",
      "3hq2.pdb1\n",
      "5m97.pdb1\n",
      "5tj4.pdb3\n",
      "1zb1.pdb1\n",
      "5giv.pdb1\n",
      "2ric.pdb1\n",
      "2bde.pdb3\n",
      "4ohf.pdb3\n",
      "4ug1.pdb1\n",
      "2w6a.pdb1\n",
      "5azs.pdb1\n",
      "5e6g.pdb3\n",
      "4xpx.pdb1\n",
      "3dxq.pdb2\n",
      "5hzp.pdb1\n",
      "5hlh.pdb2\n",
      "1ihg.pdb1\n",
      "3rko.pdb1\n",
      "1cd9.pdb1\n",
      "2wty.pdb1\n",
      "5oqo.pdb1\n",
      "3fvb.pdb1\n",
      "5xu0.pdb1\n",
      "5w81.pdb1\n",
      "3uia.pdb1\n",
      "4i1a.pdb2\n",
      "4amq.pdb1\n",
      "4h9r.pdb2\n",
      "6a2c.pdb1\n",
      "6f7s.pdb1\n",
      "1w2f.pdb1\n",
      "5g04.pdb1\n",
      "2g04.pdb3\n",
      "3fse.pdb1\n",
      "3p86.pdb1\n",
      "3viq.pdb1\n",
      "3bve.pdb1\n",
      "4gyo.pdb3\n",
      "6n1l.pdb1\n",
      "6edu.pdb1\n",
      "5m4y.pdb3\n",
      "5cfy.pdb1\n",
      "3mxz.pdb1\n",
      "4q86.pdb1\n",
      "5myd.pdb2\n",
      "5lm2.pdb2\n",
      "6r7f.pdb1\n",
      "4a2q.pdb1\n",
      "2x3v.pdb1\n",
      "2y02.pdb3\n",
      "5jvr.pdb1\n",
      "1xd4.pdb2\n",
      "5krw.pdb1\n",
      "2vf7.pdb1\n",
      "6cko.pdb1\n",
      "3nfi.pdb4\n",
      "3msv.pdb3\n",
      "2yiu.pdb1\n",
      "2osz.pdb2\n",
      "4aki.pdb1\n",
      "4lls.pdb1\n",
      "5vr2.pdb2\n",
      "5w93.pdb3\n",
      "6dg5.pdb1\n",
      "3nfi.pdb3\n",
      "6g9x.pdb1\n",
      "5lbh.pdb1\n",
      "4ky0.pdb1\n",
      "5l8g.pdb2\n",
      "5gxy.pdb1\n",
      "3t97.pdb1\n",
      "4zwr.pdb1\n",
      "6af0.pdb1\n",
      "4ayx.pdb1\n",
      "6aq3.pdb1\n",
      "2efs.pdb2\n",
      "5f28.pdb3\n",
      "3mzv.pdb1\n",
      "4abm.pdb1\n",
      "2dt5.pdb1\n",
      "1deb.pdb4\n",
      "2w2u.pdb1\n",
      "6qsk.pdb2\n",
      "4cvp.pdb1\n",
      "4xqo.pdb3\n",
      "6def.pdb3\n",
      "1pzr.pdb1\n",
      "6fx5.pdb1\n",
      "6fdp.pdb1\n",
      "4zh5.pdb2\n",
      "4knh.pdb1\n",
      "4nab.pdb1\n",
      "6tdv.pdb1\n",
      "1deb.pdb3\n",
      "6jb3.pdb1\n",
      "5yw8.pdb1\n",
      "1i50.pdb1\n",
      "5ux1.pdb1\n",
      "4mhc.pdb1\n",
      "4yk2.pdb1\n",
      "3j8y.pdb1\n",
      "6dkm.pdb1\n",
      "3b02.pdb1\n",
      "4cgv.pdb2\n",
      "5jc3.pdb1\n",
      "5lnk.pdb1\n",
      "2wuj.pdb1\n",
      "5h5m.pdb1\n",
      "5hkk.pdb1\n",
      "6bfn.pdb1\n",
      "3rx6.pdb1\n",
      "4qgp.pdb2\n",
      "5c39.pdb1\n",
      "6neq.pdb1\n",
      "6c6k.pdb2\n",
      "6def.pdb4\n",
      "4xqo.pdb4\n",
      "6gy7.pdb1\n",
      "1x90.pdb1\n",
      "4bjn.pdb4\n",
      "5mk3.pdb1\n",
      "3uun.pdb3\n",
      "3ezq.pdb1\n",
      "3mpx.pdb1\n",
      "6nf5.pdb1\n",
      "4afl.pdb1\n",
      "5xfa.pdb2\n",
      "4yvq.pdb1\n",
      "2kc3.pdb1\n",
      "3zcj.pdb1\n",
      "2hjm.pdb3\n",
      "4zva.pdb1\n",
      "1hz4.pdb2\n",
      "2wtl.pdb1\n",
      "5lmt.pdb1\n",
      "5xxf.pdb2\n",
      "5ng5.pdb1\n",
      "5wq4.pdb1\n",
      "3ck7.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 15755.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 15787.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 15818.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 15850.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 15881.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 16056.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 16235.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 16427.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2xcb.pdb2\n",
      "3nnk.pdb4\n",
      "3mdy.pdb2\n",
      "4gpk.pdb3\n",
      "6m7y.pdb2\n",
      "5ys9.pdb1\n",
      "5t4y.pdb1\n",
      "5iwq.pdb1\n",
      "3q0k.pdb1\n",
      "3l39.pdb1\n",
      "1qoy.pdb1\n",
      "3dyj.pdb1\n",
      "3wi3.pdb2\n",
      "4bjn.pdb3\n",
      "6qzr.pdb1\n",
      "4p1m.pdb1\n",
      "3nnk.pdb3\n",
      "3lmd.pdb1\n",
      "4h73.pdb2\n",
      "3o10.pdb1\n",
      "2hjm.pdb4\n",
      "6a73.pdb1\n",
      "4n5s.pdb1\n",
      "2osz.pdb3\n",
      "5myd.pdb4\n",
      "5l8g.pdb3\n",
      "4hfv.pdb1\n",
      "5lsj.pdb1\n",
      "5nen.pdb1\n",
      "4z6y.pdb1\n",
      "5dse.pdb2\n",
      "3nfi.pdb2\n",
      "5w93.pdb2\n",
      "4wu0.pdb2\n",
      "3n0p.pdb1\n",
      "3qb9.pdb1\n",
      "4u0q.pdb1\n",
      "3ug9.pdb1\n",
      "5myd.pdb3\n",
      "5mx5.pdb2\n",
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      "4xkt.pdb1\n",
      "3v5b.pdb1\n",
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      "4c7n.pdb1\n",
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      "3pla.pdb2\n",
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      "3gp4.pdb2\n",
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      "4h73.pdb3\n",
      "4aya.pdb1\n",
      "5dlq.pdb2\n",
      "2kbb.pdb1\n",
      "5xsj.pdb1\n",
      "5a5b.pdb1\n",
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      "3uun.pdb2\n",
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      "4h73.pdb4\n",
      "3qz3.pdb1\n",
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      "4gpk.pdb2\n",
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      "1deb.pdb2\n",
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      "4cgv.pdb3\n",
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      "6pus.pdb1\n",
      "4ytd.pdb1\n",
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      "4n2x.pdb1\n",
      "5ebz.pdb2\n",
      "6qsk.pdb3\n",
      "5cwn.pdb1\n",
      "1tf4.pdb2\n",
      "6apb.pdb1\n",
      "5f28.pdb2\n",
      "3uo3.pdb2\n",
      "4rc6.pdb2\n",
      "3b2t.pdb2\n",
      "6bl7.pdb1\n",
      "5kay.pdb1\n",
      "4cgv.pdb4\n",
      "5k3i.pdb1\n",
      "6def.pdb2\n",
      "4xqo.pdb2\n",
      "3esl.pdb1\n",
      "4hzk.pdb1\n",
      "5vkw.pdb1\n",
      "4k34.pdb3\n",
      "6fnd.pdb1\n",
      "2a33.pdb1\n",
      "4kjs.pdb1\n",
      "3ez0.pdb1\n",
      "5j9q.pdb3\n",
      "1ory.pdb3\n",
      "5mi0.pdb1\n",
      "3j9e.pdb1\n",
      "6fel.pdb1\n",
      "4p1w.pdb1\n",
      "1nzn.pdb1\n",
      "3b60.pdb1\n",
      "6cby.pdb2\n",
      "5jo7.pdb2\n",
      "5nvr.pdb2\n",
      "3vkg.pdb1\n",
      "3twe.pdb2\n",
      "2qlz.pdb1\n",
      "2b4f.pdb1\n",
      "3sjb.pdb1\n",
      "3cl3.pdb1\n",
      "4iyp.pdb1\n",
      "1skv.pdb1\n",
      "4d6t.pdb2\n",
      "2zfc.pdb1\n",
      "4djk.pdb2\n",
      "1beo.pdb1\n",
      "5jke.pdb1\n",
      "3ts7.pdb1\n",
      "6gqa.pdb1\n",
      "4l8t.pdb1\n",
      "4n83.pdb2\n",
      "3zxp.pdb1\n",
      "2fjc.pdb3\n",
      "2vf8.pdb1\n",
      "1yxr.pdb1\n",
      "2hsb.pdb2\n",
      "6ofp.pdb1\n",
      "4g3k.pdb1\n",
      "5zi1.pdb3\n",
      "4jdx.pdb1\n",
      "2dxb.pdb1\n",
      "5a6c.pdb2\n",
      "2gd7.pdb1\n",
      "3pw1.pdb1\n",
      "5xfs.pdb1\n",
      "3iqc.pdb1\n",
      "6csw.pdb2\n",
      "3cax.pdb1\n",
      "6pfv.pdb3\n",
      "1rpr.pdb1\n",
      "5gip.pdb2\n",
      "4xif.pdb2\n",
      "5vhh.pdb1\n",
      "5a5t.pdb1\n",
      "1ggq.pdb3\n",
      "2ec5.pdb2\n",
      "5ot4.pdb2\n",
      "5jkm.pdb2\n",
      "1nt2.pdb2\n",
      "6q45.pdb2\n",
      "3nkz.pdb2\n",
      "5ic9.pdb1\n",
      "5nm4.pdb1\n",
      "2p22.pdb3\n",
      "6tdy.pdb1\n",
      "5oyb.pdb1\n",
      "2b5u.pdb1\n",
      "4kbq.pdb1\n",
      "3wuu.pdb3\n",
      "6g2j.pdb1\n",
      "3qqc.pdb1\n",
      "6o8c.pdb1\n",
      "2v0o.pdb2\n",
      "6aki.pdb2\n",
      "4zlh.pdb1\n",
      "4rfa.pdb1\n",
      "2pnv.pdb3\n",
      "5jv3.pdb1\n",
      "1rj2.pdb2\n",
      "6djl.pdb2\n",
      "3ayf.pdb1\n",
      "5nmo.pdb1\n",
      "3oyr.pdb1\n",
      "1nf6.pdb2\n",
      "4gz5.pdb1\n",
      "3wuu.pdb4\n",
      "4iwb.pdb2\n",
      "4xcu.pdb1\n",
      "2p22.pdb4\n",
      "4boj.pdb2\n",
      "6g7m.pdb1\n",
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      "6d5d.pdb1\n",
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      "6mgw.pdb1\n",
      "5obb.pdb1\n",
      "4zey.pdb1\n",
      "3bhp.pdb2\n",
      "3vv9.pdb2\n",
      "4jbu.pdb1\n",
      "4u7y.pdb1\n",
      "4ydo.pdb1\n",
      "6epf.pdb1\n",
      "4k2p.pdb2\n",
      "6swy.pdb1\n",
      "5w5h.pdb2\n",
      "6ao3.pdb2\n",
      "6n63.pdb1\n",
      "4i0u.pdb1\n",
      "2nrj.pdb1\n",
      "2nps.pdb1\n",
      "3hym.pdb2\n",
      "5yfb.pdb1\n",
      "6pwi.pdb1\n",
      "1ek9.pdb1\n",
      "3u0c.pdb1\n",
      "3t49.pdb4\n",
      "3flv.pdb2\n",
      "2z5h.pdb2\n",
      "4doy.pdb2\n",
      "2hmx.pdb1\n",
      "5n7h.pdb1\n",
      "5hzj.pdb1\n",
      "2f66.pdb1\n",
      "6bfi.pdb2\n",
      "6l58.pdb1\n",
      "3pvy.pdb1\n",
      "4jek.pdb1\n",
      "5cbf.pdb3\n",
      "4ag6.pdb2\n",
      "1b71.pdb1\n",
      "2jl1.pdb1\n",
      "5k3j.pdb1\n",
      "2e7s.pdb2\n",
      "5k9l.pdb2\n",
      "3t49.pdb3\n",
      "3uq7.pdb2\n",
      "1bgc.pdb1\n",
      "2ijj.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 3205.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 3314.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 3320.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 3412.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 2215.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 2221.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 5349.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain J is discontinuous at line 5350.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3hxc.pdb1\n",
      "6bpq.pdb1\n",
      "5nnp.pdb1\n",
      "1ggq.pdb2\n",
      "5vyj.pdb1\n",
      "2oto.pdb1\n",
      "6qe6.pdb2\n",
      "4k84.pdb1\n",
      "3c3l.pdb2\n",
      "4xif.pdb3\n",
      "3f4y.pdb1\n",
      "3nkz.pdb3\n",
      "6csw.pdb4\n",
      "3rkl.pdb1\n",
      "5ot4.pdb3\n",
      "4dyx.pdb1\n",
      "5hfm.pdb1\n",
      "4atk.pdb1\n",
      "4h9q.pdb2\n",
      "4j96.pdb1\n",
      "4xif.pdb4\n",
      "5gnj.pdb1\n",
      "6qtk.pdb1\n",
      "6b02.pdb1\n",
      "4jyl.pdb1\n",
      "4fzs.pdb1\n",
      "5j1f.pdb2\n",
      "5zi1.pdb2\n",
      "4iit.pdb1\n",
      "5ot4.pdb4\n",
      "4u4w.pdb2\n",
      "6rzt.pdb1\n",
      "6pfv.pdb2\n",
      "4wd9.pdb1\n",
      "3crc.pdb1\n",
      "5cwt.pdb1\n",
      "6csw.pdb3\n",
      "1rci.pdb1\n",
      "5zxd.pdb2\n",
      "2x17.pdb1\n",
      "5uae.pdb1\n",
      "4doh.pdb1\n",
      "1mg1.pdb1\n",
      "5o5l.pdb1\n",
      "4q85.pdb1\n",
      "2d4y.pdb1\n",
      "4eeb.pdb1\n",
      "4rfx.pdb1\n",
      "5jo7.pdb3\n",
      "4n83.pdb3\n",
      "1was.pdb1\n",
      "2fjc.pdb2\n",
      "5ly0.pdb1\n",
      "1lkp.pdb2\n",
      "4c8h.pdb1\n",
      "4djk.pdb3\n",
      "5jo7.pdb4\n",
      "5hyl.pdb1\n",
      "5j9q.pdb2\n",
      "5c1m.pdb1\n",
      "6mgn.pdb1\n",
      "6i8a.pdb2\n",
      "2xze.pdb1\n",
      "5huz.pdb1\n",
      "2p06.pdb1\n",
      "3hd7.pdb2\n",
      "4k34.pdb2\n",
      "4mt0.pdb1\n",
      "1c1g.pdb2\n",
      "4zwq.pdb1\n",
      "6azv.pdb1\n",
      "1ory.pdb2\n",
      "3qf7.pdb1\n",
      "2q6q.pdb1\n",
      "4n83.pdb4\n",
      "4cvs.pdb1\n",
      "3ubw.pdb2\n",
      "4abn.pdb1\n",
      "1qr9.pdb1\n",
      "1ztm.pdb1\n",
      "4wy4.pdb1\n",
      "6ejl.pdb1\n",
      "3jq1.pdb1\n",
      "6ao3.pdb4\n",
      "5cbf.pdb2\n",
      "4k2p.pdb4\n",
      "5c6f.pdb1\n",
      "2yy0.pdb1\n",
      "3hym.pdb4\n",
      "2n8i.pdb1\n",
      "2py3.pdb1\n",
      "3t49.pdb2\n",
      "6i57.pdb1\n",
      "3q15.pdb1\n",
      "4doy.pdb4\n",
      "2e7s.pdb3\n",
      "2z5h.pdb4\n",
      "3uq3.pdb1\n",
      "6qb5.pdb1\n",
      "4k2p.pdb3\n",
      "1tr2.pdb2\n",
      "5ln3.pdb1\n",
      "6ao3.pdb3\n",
      "4yk1.pdb1\n",
      "2q80.pdb1\n",
      "4lle.pdb1\n",
      "3vv9.pdb3\n",
      "5fvl.pdb2\n",
      "4doy.pdb3\n",
      "2pjw.pdb2\n",
      "2e7s.pdb4\n",
      "5uf5.pdb1\n",
      "2z5h.pdb3\n",
      "4u6s.pdb1\n",
      "6rn3.pdb1\n",
      "4jq5.pdb1\n",
      "1fvf.pdb1\n",
      "3hym.pdb3\n",
      "6iok.pdb1\n",
      "6s7t.pdb1\n",
      "4boj.pdb3\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4445.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 4460.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 4465.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 4473.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4477.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 4485.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 8830.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 8845.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 8850.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 8858.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 8862.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 8870.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2oxl.pdb1\n",
      "3rqw.pdb2\n",
      "1nf6.pdb3\n",
      "2a3q.pdb1\n",
      "5och.pdb1\n",
      "5duo.pdb1\n",
      "5mk0.pdb1\n",
      "6ait.pdb1\n",
      "5jre.pdb1\n",
      "3bhp.pdb3\n",
      "6djl.pdb4\n",
      "3otn.pdb1\n",
      "1rj2.pdb4\n",
      "2ymb.pdb1\n",
      "2awy.pdb2\n",
      "5cy5.pdb1\n",
      "3wuu.pdb2\n",
      "1nf6.pdb4\n",
      "2crb.pdb1\n",
      "2p22.pdb2\n",
      "1ayx.pdb1\n",
      "3oaa.pdb1\n",
      "5jw9.pdb1\n",
      "1c3c.pdb1\n",
      "2vkj.pdb1\n",
      "3tq7.pdb1\n",
      "2x2f.pdb1\n",
      "2pnv.pdb2\n",
      "6djl.pdb3\n",
      "1rj2.pdb3\n",
      "5m0j.pdb1\n",
      "2yv9.pdb1\n",
      "2wqh.pdb1\n",
      "4ckk.pdb1\n",
      "5xi8.pdb1\n",
      "3bhp.pdb4\n",
      "3hhg.pdb1\n",
      "4p1n.pdb1\n",
      "6kla.pdb1\n",
      "6q6g.pdb1\n",
      "4im2.pdb2\n",
      "3pvt.pdb1\n",
      "3v5y.pdb1\n",
      "1elq.pdb1\n",
      "3l9f.pdb2\n",
      "6kbn.pdb1\n",
      "3c4f.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 19152.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 19204.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5278.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5301.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 5306.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 5406.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2hz8.pdb1\n",
      "5c9n.pdb1\n",
      "5x7d.pdb1\n",
      "6noy.pdb4\n",
      "4c57.pdb1\n",
      "5odw.pdb1\n",
      "1zuj.pdb1\n",
      "4jyx.pdb1\n",
      "4xnh.pdb1\n",
      "1twg.pdb1\n",
      "2vn7.pdb1\n",
      "5zji.pdb1\n",
      "1e7p.pdb1\n",
      "2zqm.pdb1\n",
      "2xyn.pdb1\n",
      "5kc1.pdb3\n",
      "4iyl.pdb3\n",
      "6oh4.pdb2\n",
      "5bv9.pdb1\n",
      "5n9j.pdb1\n",
      "6noy.pdb3\n",
      "6akl.pdb1\n",
      "5n7e.pdb1\n",
      "4lgd.pdb2\n",
      "5xbj.pdb1\n",
      "1zrt.pdb1\n",
      "4kkm.pdb1\n",
      "5zko.pdb1\n",
      "2pbi.pdb1\n",
      "4ut1.pdb1\n",
      "3abk.pdb1\n",
      "1oh8.pdb1\n",
      "5ep6.pdb1\n",
      "4cem.pdb2\n",
      "3c1m.pdb3\n",
      "2f3o.pdb2\n",
      "2dq0.pdb1\n",
      "3q4h.pdb1\n",
      "5xau.pdb1\n",
      "6jb1.pdb1\n",
      "2vvs.pdb1\n",
      "5eeb.pdb1\n",
      "5wu7.pdb1\n",
      "6fv8.pdb1\n",
      "3x17.pdb1\n",
      "3q1o.pdb1\n",
      "4cvr.pdb1\n",
      "1yfm.pdb1\n",
      "4z2c.pdb1\n",
      "3jq0.pdb1\n",
      "3gjo.pdb1\n",
      "2opz.pdb1\n",
      "3a8q.pdb2\n",
      "6cp6.pdb1\n",
      "5o01.pdb1\n",
      "3mcx.pdb1\n",
      "3qh9.pdb1\n",
      "5h7c.pdb1\n",
      "1urq.pdb1\n",
      "2chp.pdb1\n",
      "6sf4.pdb1\n",
      "5xua.pdb2\n",
      "4j7k.pdb2\n",
      "4eru.pdb1\n",
      "6hc2.pdb3\n",
      "4zog.pdb2\n",
      "6r0z.pdb1\n",
      "4l2w.pdb1\n",
      "5zig.pdb4\n",
      "5udc.pdb1\n",
      "1ii8.pdb1\n",
      "2v1y.pdb1\n",
      "6pza.pdb1\n",
      "5v87.pdb1\n",
      "4cdr.pdb3\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 2822.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 2824.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 2825.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 2828.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 2902.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 2958.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 5568.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 5569.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 5572.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 5574.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 5643.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 5697.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "1a38.pdb1\n",
      "2rdp.pdb1\n",
      "5gz9.pdb1\n",
      "5a7d.pdb4\n",
      "5f8v.pdb2\n",
      "3hiu.pdb1\n",
      "3n24.pdb2\n",
      "1w3b.pdb1\n",
      "6rwe.pdb1\n",
      "5jvp.pdb1\n",
      "4r42.pdb1\n",
      "1gu2.pdb1\n",
      "5a7d.pdb3\n",
      "3qku.pdb2\n",
      "4cdr.pdb4\n",
      "3k1s.pdb2\n",
      "6q56.pdb1\n",
      "4uc2.pdb1\n",
      "3o0z.pdb1\n",
      "4h6y.pdb2\n",
      "5zig.pdb3\n",
      "6hc2.pdb4\n",
      "2wm9.pdb1\n",
      "1noh.pdb3\n",
      "4nle.pdb1\n",
      "1l2a.pdb1\n",
      "3rfu.pdb2\n",
      "4bxh.pdb3\n",
      "3ug7.pdb1\n",
      "6oit.pdb1\n",
      "1r5q.pdb2\n",
      "2f1k.pdb1\n",
      "5od9.pdb1\n",
      "1ykh.pdb1\n",
      "3g7c.pdb1\n",
      "5xn6.pdb3\n",
      "2lmg.pdb1\n",
      "4j97.pdb1\n",
      "3phf.pdb1\n",
      "2kvp.pdb1\n",
      "3eab.pdb4\n",
      "3dby.pdb3\n",
      "3d0i.pdb3\n",
      "5j1g.pdb2\n",
      "6gql.pdb1\n",
      "4d55.pdb1\n",
      "3acx.pdb1\n",
      "1r8i.pdb1\n",
      "2xkj.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 5917.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2zuq.pdb2\n",
      "5ew5.pdb2\n",
      "1x8z.pdb1\n",
      "3t6g.pdb1\n",
      "6o07.pdb1\n",
      "5vyk.pdb1\n",
      "3dby.pdb4\n",
      "4kpp.pdb2\n",
      "3lvs.pdb1\n",
      "3eab.pdb3\n",
      "1vsg.pdb1\n",
      "6rdk.pdb1\n",
      "6rfr.pdb1\n",
      "5k7b.pdb2\n",
      "4jo7.pdb2\n",
      "1xcb.pdb1\n",
      "3stq.pdb1\n",
      "4ev6.pdb1\n",
      "1ufa.pdb1\n",
      "4xk8.pdb1\n",
      "3oa7.pdb1\n",
      "5c76.pdb1\n",
      "1jm0.pdb1\n",
      "3kd7.pdb1\n",
      "6hze.pdb2\n",
      "3wgi.pdb2\n",
      "3qtm.pdb2\n",
      "6j6n.pdb1\n",
      "5o60.pdb1\n",
      "4qq5.pdb2\n",
      "3c1m.pdb2\n",
      "6n62.pdb1\n",
      "2h7v.pdb2\n",
      "6a9p.pdb1\n",
      "2pqr.pdb1\n",
      "3epy.pdb2\n",
      "5oce.pdb1\n",
      "3ckb.pdb1\n",
      "5d58.pdb1\n",
      "3fdh.pdb1\n",
      "5n72.pdb1\n",
      "6iuh.pdb2\n",
      "4myc.pdb1\n",
      "3d0t.pdb1\n",
      "4bt8.pdb1\n",
      "6or6.pdb1\n",
      "5c21.pdb1\n",
      "5z8u.pdb1\n",
      "3ehn.pdb1\n",
      "5oqt.pdb1\n",
      "2vko.pdb2\n",
      "3kbt.pdb1\n",
      "5c3l.pdb1\n",
      "5hyt.pdb1\n",
      "3sr2.pdb1\n",
      "6noy.pdb2\n",
      "4lgd.pdb3\n",
      "4iyl.pdb2\n",
      "5kc1.pdb2\n",
      "4x5m.pdb2\n",
      "5d8s.pdb1\n",
      "4obw.pdb1\n",
      "4mh6.pdb1\n",
      "6grj.pdb1\n",
      "1ydx.pdb1\n",
      "4x01.pdb2\n",
      "4m3l.pdb1\n",
      "1hzi.pdb1\n",
      "3vxd.pdb1\n",
      "2fl0.pdb1\n",
      "3ayg.pdb1\n",
      "3rc8.pdb1\n",
      "2iak.pdb1\n",
      "4h22.pdb1\n",
      "5ch6.pdb1\n",
      "1z4a.pdb1\n",
      "4hpq.pdb1\n",
      "3gtd.pdb1\n",
      "4lgd.pdb4\n",
      "6re6.pdb1\n",
      "5b83.pdb2\n",
      "5jxf.pdb1\n",
      "3c4f.pdb3\n",
      "5cof.pdb1\n",
      "3rfu.pdb4\n",
      "6a4u.pdb1\n",
      "5ew5.pdb3\n",
      "5xcu.pdb1\n",
      "6d9f.pdb1\n",
      "1ic2.pdb2\n",
      "1dvb.pdb2\n",
      "5i7c.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 6284.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 6289.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 6299.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 6460.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 802.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 808.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "3eab.pdb2\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 5149.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 5151.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 5153.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 5212.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 9577.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 9579.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 9581.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 9640.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 14005.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 14007.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain M is discontinuous at line 14009.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain N is discontinuous at line 14068.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5aij.pdb1\n",
      "3leh.pdb1\n",
      "3rdh.pdb1\n",
      "1fzh.pdb1\n",
      "3he4.pdb1\n",
      "5wwl.pdb1\n",
      "4bxh.pdb2\n",
      "4aly.pdb1\n",
      "4yf1.pdb2\n",
      "5ew5.pdb4\n",
      "1y8r.pdb1\n",
      "1noh.pdb2\n",
      "3rfu.pdb3\n",
      "3ffl.pdb2\n",
      "4w7y.pdb1\n",
      "4q88.pdb1\n",
      "5u1a.pdb1\n",
      "5d7g.pdb2\n",
      "4gou.pdb1\n",
      "5t16.pdb2\n",
      "1u59.pdb1\n",
      "3d0i.pdb2\n",
      "5doq.pdb1\n",
      "5xn6.pdb2\n",
      "2ond.pdb1\n",
      "3dby.pdb2\n",
      "6ar7.pdb1\n",
      "4cyb.pdb1\n",
      "3a8q.pdb4\n",
      "6fue.pdb1\n",
      "3kdy.pdb1\n",
      "5xua.pdb4\n",
      "3n24.pdb3\n",
      "6r2g.pdb2\n",
      "6jtc.pdb1\n",
      "5j9t.pdb1\n",
      "6nq8.pdb1\n",
      "4dn8.pdb1\n",
      "5zig.pdb2\n",
      "3lof.pdb1\n",
      "5t49.pdb1\n",
      "5a7d.pdb2\n",
      "5ka5.pdb1\n",
      "5mnt.pdb1\n",
      "5f8v.pdb4\n",
      "6f5d.pdb1\n",
      "3k1s.pdb3\n",
      "5d0q.pdb1\n",
      "1is2.pdb1\n",
      "6e2j.pdb1\n",
      "5n5e.pdb1\n",
      "4fm3.pdb1\n",
      "3pmm.pdb1\n",
      "5xua.pdb3\n",
      "1ukl.pdb2\n",
      "3n24.pdb4\n",
      "3a8q.pdb3\n",
      "1qbz.pdb2\n",
      "4jpp.pdb1\n",
      "1rtr.pdb1\n",
      "5sx9.pdb1\n",
      "4cdr.pdb2\n",
      "3k1s.pdb4\n",
      "2dl1.pdb1\n",
      "4pjw.pdb1\n",
      "5f8v.pdb3\n",
      "4apo.pdb2\n",
      "4eqf.pdb1\n",
      "4kjr.pdb1\n",
      "6hc2.pdb2\n",
      "4pdx.pdb1\n",
      "3p30.pdb1\n",
      "2p7v.pdb2\n",
      "5ir6.pdb1\n",
      "3thf.pdb1\n",
      "2v0x.pdb1\n",
      "5h69.pdb1\n",
      "5d90.pdb1\n",
      "2gd5.pdb2\n",
      "1vmg.pdb1\n",
      "5xn5.pdb1\n",
      "3s9v.pdb2\n",
      "2x7r.pdb1\n",
      "5zhb.pdb1\n",
      "6c08.pdb2\n",
      "5xef.pdb1\n",
      "2r2f.pdb1\n",
      "6idp.pdb1\n",
      "6qj1.pdb1\n",
      "5iwa.pdb1\n",
      "1b5l.pdb1\n",
      "2z4y.pdb1\n",
      "6ds9.pdb1\n",
      "3x0x.pdb1\n",
      "2hr5.pdb2\n",
      "5xki.pdb1\n",
      "5giv.pdb3\n",
      "4ed9.pdb1\n",
      "3lom.pdb1\n",
      "2bde.pdb1\n",
      "3eq2.pdb1\n",
      "5tj4.pdb1\n",
      "1wle.pdb1\n",
      "2xz0.pdb2\n",
      "2q0o.pdb1\n",
      "6rw9.pdb1\n",
      "5x11.pdb3\n",
      "5j4o.pdb1\n",
      "5l0y.pdb3\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain K is discontinuous at line 1013.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain L is discontinuous at line 1040.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5kp0.pdb1\n",
      "6dlc.pdb1\n",
      "3nmd.pdb3\n",
      "5cj1.pdb1\n",
      "6rwb.pdb1\n",
      "2wb7.pdb1\n",
      "6f6p.pdb1\n",
      "2frv.pdb4\n",
      "5j1h.pdb1\n",
      "3w54.pdb1\n",
      "3h01.pdb1\n",
      "4mt6.pdb1\n",
      "1f4m.pdb1\n",
      "5l0y.pdb4\n",
      "5z96.pdb1\n",
      "4dji.pdb1\n",
      "4j98.pdb2\n",
      "5c5b.pdb2\n",
      "1am9.pdb1\n",
      "1q5n.pdb1\n",
      "5x11.pdb4\n",
      "1ojh.pdb1\n",
      "2frv.pdb3\n",
      "1ovv.pdb1\n",
      "6c8t.pdb2\n",
      "6ixf.pdb2\n",
      "2dfk.pdb3\n",
      "3wki.pdb1\n",
      "4err.pdb1\n",
      "5z7b.pdb1\n",
      "4jau.pdb1\n",
      "5e57.pdb1\n",
      "2yia.pdb4\n",
      "6dlv.pdb1\n",
      "6nrb.pdb1\n",
      "2ntx.pdb1\n",
      "6ehs.pdb1\n",
      "4f53.pdb1\n",
      "1fav.pdb1\n",
      "2au5.pdb1\n",
      "5de2.pdb2\n",
      "4jxy.pdb1\n",
      "6rcv.pdb2\n",
      "5jhe.pdb1\n",
      "1ug7.pdb1\n",
      "3ksy.pdb2\n",
      "3klt.pdb3\n",
      "3ehm.pdb2\n",
      "3l4q.pdb2\n",
      "5i4j.pdb1\n",
      "5c22.pdb2\n",
      "2pif.pdb1\n",
      "3qo5.pdb1\n",
      "2vzb.pdb1\n",
      "5lki.pdb1\n",
      "5nwk.pdb2\n",
      "5xvd.pdb1\n",
      "4w8f.pdb2\n",
      "4ehi.pdb2\n",
      "2z2t.pdb1\n",
      "3nmu.pdb1\n",
      "2idg.pdb1\n",
      "4llc.pdb1\n",
      "2yia.pdb3\n",
      "4j41.pdb3\n",
      "4ii4.pdb2\n",
      "2y4t.pdb2\n",
      "4hwd.pdb1\n",
      "1orj.pdb2\n",
      "6e10.pdb1\n",
      "1f23.pdb2\n",
      "1ksc.pdb1\n",
      "2yfd.pdb2\n",
      "2bbh.pdb1\n",
      "6jlb.pdb1\n",
      "6hzf.pdb1\n",
      "1lt1.pdb1\n",
      "5wjb.pdb2\n",
      "6cyf.pdb2\n",
      "4iff.pdb2\n",
      "3k1i.pdb1\n",
      "1cnt.pdb2\n",
      "5vlr.pdb3\n",
      "1few.pdb1\n",
      "5fcm.pdb1\n",
      "3e0s.pdb2\n",
      "6qma.pdb1\n",
      "5fi0.pdb2\n",
      "1r6t.pdb1\n",
      "1y1u.pdb2\n",
      "5cy3.pdb1\n",
      "4on9.pdb2\n",
      "3rh3.pdb2\n",
      "6jzr.pdb1\n",
      "2ome.pdb1\n",
      "6ek7.pdb1\n",
      "6gw5.pdb2\n",
      "3r6n.pdb2\n",
      "4ryj.pdb1\n",
      "6fes.pdb1\n",
      "4z8n.pdb3\n",
      "2j2f.pdb1\n",
      "1rq0.pdb1\n",
      "4y1k.pdb1\n",
      "1na3.pdb1\n",
      "4j98.pdb3\n",
      "2yq8.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 3940.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 4017.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 4086.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 4142.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 8076.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 8153.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 8222.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain D is discontinuous at line 8278.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2p1a.pdb1\n",
      "1o9r.pdb1\n",
      "3wj8.pdb1\n",
      "6i1r.pdb1\n",
      "3aqb.pdb1\n",
      "2lfd.pdb1\n",
      "2frv.pdb2\n",
      "5jbr.pdb1\n",
      "1ec5.pdb2\n",
      "2dfk.pdb2\n",
      "1env.pdb1\n",
      "5xub.pdb1\n",
      "4zsz.pdb1\n",
      "5h3i.pdb1\n",
      "4fla.pdb2\n",
      "3bre.pdb2\n",
      "2ooe.pdb1\n",
      "5x11.pdb2\n",
      "3c23.pdb1\n",
      "5l0y.pdb2\n",
      "6gcv.pdb1\n",
      "1rcc.pdb1\n",
      "3jr1.pdb1\n",
      "6jxr.pdb1\n",
      "5vl4.pdb1\n",
      "3nmd.pdb2\n",
      "5a31.pdb1\n",
      "1nfv.pdb1\n",
      "4hvs.pdb2\n",
      "4g1t.pdb1\n",
      "5mw9.pdb2\n",
      "4tma.pdb2\n",
      "5t58.pdb1\n",
      "3hq2.pdb2\n",
      "4lwz.pdb1\n",
      "1zb1.pdb2\n",
      "3pik.pdb1\n",
      "5giv.pdb2\n",
      "3s9v.pdb4\n",
      "3v1f.pdb1\n",
      "1jqo.pdb2\n",
      "5hw2.pdb1\n",
      "6gka.pdb1\n",
      "4ux9.pdb1\n",
      "4ox0.pdb2\n",
      "1l8d.pdb1\n",
      "5zih.pdb1\n",
      "3s9v.pdb3\n",
      "1lf9.pdb1\n",
      "4bwn.pdb1\n",
      "5yix.pdb1\n",
      "2hv8.pdb2\n",
      "6inr.pdb1\n",
      "4h9s.pdb1\n",
      "5dmz.pdb1\n",
      "1vei.pdb1\n",
      "6cyf.pdb4\n",
      "2xcc.pdb1\n",
      "5o71.pdb1\n",
      "3s9g.pdb1\n",
      "5oi7.pdb1\n",
      "6ezn.pdb1\n",
      "4on9.pdb3\n",
      "3pe3.pdb1\n",
      "5fi0.pdb4\n",
      "1fs0.pdb1\n",
      "3rqu.pdb1\n",
      "2rai.pdb1\n",
      "4z8n.pdb2\n",
      "2a9u.pdb1\n",
      "5f5p.pdb1\n",
      "5cjs.pdb1\n",
      "6f62.pdb1\n",
      "2v6y.pdb1\n",
      "5vlr.pdb2\n",
      "4j5l.pdb2\n",
      "5a9q.pdb1\n",
      "6cyf.pdb3\n",
      "4bej.pdb1\n",
      "6nin.pdb1\n",
      "5o0t.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 7222.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 7245.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 7253.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 7329.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5fi0.pdb3\n",
      "4hh2.pdb1\n",
      "6kkt.pdb1\n",
      "1i4d.pdb1\n",
      "3zou.pdb1\n",
      "2yia.pdb2\n",
      "4n5c.pdb1\n",
      "4w8f.pdb3\n",
      "2wj9.pdb1\n",
      "5e3x.pdb1\n",
      "1kln.pdb1\n",
      "5zzj.pdb1\n",
      "6quz.pdb2\n",
      "3j9v.pdb1\n",
      "4hny.pdb2\n",
      "2zcw.pdb1\n",
      "2y4t.pdb3\n",
      "4j41.pdb2\n",
      "1orj.pdb3\n",
      "5c22.pdb4\n",
      "6ian.pdb1\n",
      "5nwk.pdb4\n",
      "5azo.pdb1\n",
      "6b73.pdb1\n",
      "1c94.pdb2\n",
      "3e5x.pdb2\n",
      "4jmr.pdb2\n",
      "1wp9.pdb1\n",
      "3s4w.pdb1\n",
      "3ajw.pdb1\n",
      "4buj.pdb2\n",
      "4zmh.pdb1\n",
      "5nwk.pdb3\n",
      "1orj.pdb4\n",
      "5c22.pdb3\n",
      "3atp.pdb1\n",
      "6g31.pdb1\n",
      "2zdi.pdb1\n",
      "2ql2.pdb1\n",
      "4wfd.pdb1\n",
      "3klt.pdb2\n",
      "1i50.pdb2\n",
      "3rrk.pdb1\n",
      "5ux1.pdb2\n",
      "3whj.pdb3\n",
      "4eju.pdb1\n",
      "4i9c.pdb1\n",
      "4yk2.pdb2\n",
      "6dkm.pdb2\n",
      "4txr.pdb1\n",
      "4e61.pdb1\n",
      "5l8r.pdb1\n",
      "5jc3.pdb2\n",
      "3wmi.pdb1\n",
      "4cgv.pdb1\n",
      "5hkk.pdb2\n",
      "6qv7.pdb1\n",
      "6bfn.pdb2\n",
      "2for.pdb1\n",
      "5jwi.pdb1\n",
      "5h5m.pdb2\n",
      "1wp8.pdb1\n",
      "6gmm.pdb1\n",
      "6c6k.pdb1\n",
      "4qgp.pdb1\n",
      "6gy7.pdb2\n",
      "1x90.pdb2\n",
      "5k3i.pdb4\n",
      "5zak.pdb1\n",
      "5o66.pdb1\n",
      "4xgs.pdb1\n",
      "6ogd.pdb1\n",
      "6aq3.pdb2\n",
      "3etv.pdb1\n",
      "5wa4.pdb1\n",
      "6aei.pdb1\n",
      "2efs.pdb1\n",
      "5szh.pdb1\n",
      "4abm.pdb2\n",
      "2dt5.pdb2\n",
      "2w2u.pdb2\n",
      "6qsk.pdb1\n",
      "5k3i.pdb3\n",
      "5gwm.pdb1\n",
      "4knh.pdb2\n",
      "5kay.pdb3\n",
      "4zh5.pdb1\n",
      "3h3m.pdb1\n",
      "5z8s.pdb1\n",
      "6m7y.pdb1\n",
      "4jo9.pdb1\n",
      "5hud.pdb1\n",
      "1jgc.pdb1\n",
      "3q0k.pdb2\n",
      "3dyj.pdb2\n",
      "3wi3.pdb1\n",
      "6qzr.pdb2\n",
      "3q8t.pdb1\n",
      "4gz6.pdb4\n",
      "4rsi.pdb1\n",
      "3o10.pdb2\n",
      "4h73.pdb1\n",
      "1k34.pdb1\n",
      "1xwm.pdb1\n",
      "6bqt.pdb3\n",
      "5mk3.pdb2\n",
      "3df8.pdb1\n",
      "4gz6.pdb3\n",
      "3ezq.pdb2\n",
      "4xd7.pdb1\n",
      "6hq8.pdb1\n",
      "4afl.pdb2\n",
      "5xfa.pdb1\n",
      "1hz4.pdb1\n",
      "2xs1.pdb1\n",
      "5g36.pdb1\n",
      "6bqt.pdb4\n",
      "3zcj.pdb2\n",
      "3pwx.pdb1\n",
      "5xxf.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 15777.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 15809.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 15840.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 15872.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 15903.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain F is discontinuous at line 16104.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain G is discontinuous at line 16283.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain H is discontinuous at line 16509.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2xcb.pdb1\n",
      "3ck7.pdb2\n",
      "5wq4.pdb2\n",
      "3qz3.pdb3\n",
      "3mdy.pdb1\n",
      "4gof.pdb1\n",
      "5hyg.pdb1\n",
      "6eou.pdb1\n",
      "4i1a.pdb1\n",
      "5l22.pdb1\n",
      "3ncb.pdb1\n",
      "6h8f.pdb1\n",
      "4h9r.pdb1\n",
      "1w2f.pdb2\n",
      "6f7s.pdb2\n",
      "5ero.pdb4\n",
      "3viq.pdb2\n",
      "3p86.pdb2\n",
      "6r7n.pdb1\n",
      "2rmk.pdb1\n",
      "4l9u.pdb1\n",
      "4fyg.pdb1\n",
      "5mc9.pdb1\n",
      "6i7k.pdb1\n",
      "3dxq.pdb1\n",
      "5hlh.pdb1\n",
      "5xte.pdb1\n",
      "5i4r.pdb1\n",
      "5ero.pdb3\n",
      "3rko.pdb2\n",
      "2v66.pdb1\n",
      "6tys.pdb1\n",
      "2osz.pdb1\n",
      "5gna.pdb1\n",
      "5ung.pdb1\n",
      "6g9x.pdb2\n",
      "5vr2.pdb1\n",
      "5l8g.pdb1\n",
      "6o7x.pdb1\n",
      "3cih.pdb1\n",
      "4a4a.pdb1\n",
      "4q86.pdb2\n",
      "5yfp.pdb1\n",
      "5myd.pdb1\n",
      "4a2q.pdb2\n",
      "5lm2.pdb1\n",
      "5h64.pdb1\n",
      "2x3v.pdb2\n",
      "3rkg.pdb1\n",
      "5jvr.pdb2\n",
      "3hah.pdb1\n",
      "1xd4.pdb1\n",
      "3gpv.pdb1\n",
      "2vf7.pdb2\n",
      "5mil.pdb1\n",
      "2avp.pdb1\n",
      "4afl.pdb3\n",
      "5dlq.pdb1\n",
      "5mk3.pdb3\n",
      "2clb.pdb1\n",
      "3ezq.pdb3\n",
      "3uun.pdb1\n",
      "3ibj.pdb1\n",
      "4gz6.pdb2\n",
      "6fgk.pdb1\n",
      "3ck7.pdb3\n",
      "3m31.pdb2\n",
      "4gpk.pdb1\n",
      "3qz3.pdb2\n",
      "3zcj.pdb3\n",
      "2hjm.pdb1\n",
      "3q4f.pdb2\n",
      "2c9l.pdb1\n",
      "5w3s.pdb1\n",
      "5n78.pdb1\n",
      "5mk3.pdb4\n",
      "1z0j.pdb1\n",
      "3ezq.pdb4\n",
      "3n06.pdb1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 67116.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 67175.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 67239.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 67298.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 67314.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 67327.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 100507.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 100566.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 100630.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 100689.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 100705.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 100718.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 133898.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 133957.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 134021.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 134080.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 134096.\n",
      "  warnings.warn(\n",
      "/Users/gutorhys/opt/anaconda3/envs/Biopython/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain C is discontinuous at line 134109.\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "6qzr.pdb3\n",
      "4bjn.pdb1\n",
      "4gam.pdb2\n",
      "4jnh.pdb1\n",
      "2odu.pdb1\n",
      "1pvh.pdb2\n",
      "3mtu.pdb2\n",
      "3ceg.pdb1\n",
      "3etz.pdb1\n",
      "6iol.pdb1\n",
      "5me8.pdb1\n",
      "2kc7.pdb1\n",
      "6raf.pdb1\n",
      "6bqt.pdb2\n",
      "3zcj.pdb4\n",
      "3gp4.pdb1\n",
      "5jr9.pdb1\n",
      "3nnk.pdb1\n",
      "6iac.pdb1\n",
      "3ezu.pdb1\n",
      "3ck7.pdb4\n",
      "6px0.pdb1\n",
      "5ebz.pdb1\n",
      "2oie.pdb1\n",
      "5ux1.pdb4\n",
      "4abm.pdb3\n",
      "3gqi.pdb1\n",
      "4fp4.pdb1\n",
      "1xg2.pdb1\n",
      "4dzu.pdb1\n",
      "6e11.pdb1\n",
      "6dkm.pdb4\n",
      "6hzg.pdb1\n",
      "6aq3.pdb3\n",
      "5f28.pdb1\n",
      "3uo3.pdb1\n",
      "4rc6.pdb1\n",
      "1tf4.pdb1\n",
      "5d8y.pdb1\n",
      "5kay.pdb2\n",
      "3b2t.pdb1\n",
      "6u94.pdb1\n",
      "3esl.pdb2\n",
      "5k9o.pdb1\n",
      "6gy7.pdb4\n",
      "1x90.pdb4\n",
      "5k3i.pdb2\n",
      "2ap3.pdb1\n",
      "6def.pdb1\n",
      "4xqo.pdb1\n",
      "6h4i.pdb1\n",
      "6f38.pdb1\n",
      "4q4j.pdb1\n",
      "5i6r.pdb1\n",
      "2f2g.pdb1\n",
      "4o5j.pdb1\n",
      "6dkm.pdb3\n",
      "3trt.pdb1\n",
      "5yb3.pdb1\n",
      "1deb.pdb1\n",
      "2fbn.pdb1\n",
      "6d03.pdb1\n",
      "3whj.pdb2\n",
      "5ux1.pdb3\n",
      "2ux1.pdb1\n",
      "3lpx.pdb1\n",
      "5o7g.pdb1\n",
      "6nrc.pdb1\n",
      "2nty.pdb1\n",
      "6gy7.pdb3\n",
      "1x90.pdb3\n",
      "4cvt.pdb1\n",
      "4f52.pdb1\n",
      "5ooq.pdb2\n",
      "4u0q.pdb2\n",
      "3k29.pdb1\n",
      "5bun.pdb1\n",
      "6al2.pdb2\n",
      "5mx5.pdb1\n",
      "4a2q.pdb3\n",
      "6ukj.pdb1\n",
      "2x4l.pdb1\n",
      "5m4y.pdb1\n",
      "3v5b.pdb2\n",
      "4q86.pdb3\n",
      "5lb7.pdb1\n",
      "2vf7.pdb3\n",
      "6c48.pdb2\n",
      "3pla.pdb1\n",
      "3rze.pdb1\n",
      "5j1i.pdb1\n",
      "3msv.pdb1\n",
      "4wlr.pdb1\n",
      "5dzt.pdb1\n",
      "5ujj.pdb1\n",
      "2qza.pdb1\n",
      "2y02.pdb1\n",
      "5jvr.pdb3\n",
      "5uhs.pdb1\n",
      "6a73.pdb2\n",
      "4q86.pdb4\n",
      "4a2q.pdb4\n",
      "4xhc.pdb1\n",
      "4u3f.pdb1\n",
      "6rw8.pdb1\n",
      "5jvr.pdb4\n",
      "5lsj.pdb2\n",
      "4z6y.pdb2\n",
      "5dse.pdb1\n",
      "5w93.pdb1\n",
      "3e04.pdb1\n",
      "3nfi.pdb1\n",
      "4wu0.pdb1\n",
      "2vf7.pdb4\n",
      "6jt2.pdb1\n",
      "2vyi.pdb1\n",
      "6r80.pdb1\n",
      "1vjx.pdb1\n",
      "5h3d.pdb1\n",
      "5dbk.pdb1\n",
      "5e6g.pdb1\n",
      "2ipz.pdb1\n",
      "6cp8.pdb2\n",
      "4ohf.pdb1\n",
      "5e8h.pdb1\n",
      "5iig.pdb1\n",
      "5cws.pdb1\n",
      "5ero.pdb2\n",
      "5x9x.pdb1\n",
      "5z8j.pdb1\n",
      "5ls9.pdb1\n",
      "2vxg.pdb2\n",
      "5jrw.pdb1\n",
      "4gyo.pdb1\n",
      "5n9y.pdb1\n",
      "4bzs.pdb1\n",
      "6ud8.pdb1\n",
      "2g04.pdb1\n"
     ]
    }
   ],
   "source": [
    "for pdb_entry in os.listdir(pdb_file_directory):\n",
    "    if (#pdb_entry[-4:] == \"pdb1\" or pdb_entry[-4:] == \"pdb2\" or pdb_entry[-4:] == \"pdb3\" or pdb_entry[-4:] == \"pdb4\" or\n",
    "    pdb_entry[-4:] == \"pdb5\" or pdb_entry[-4:] == \"pdb6\" or pdb_entry[-4:] == \"pdb7\" or pdb_entry[-4:] == \"pdb8\"):\n",
    "        structure = p.get_structure(pdb_entry, pdb_file_directory+pdb_entry)\n",
    "        io = PDB.PDBIO()\n",
    "        io.set_structure(structure)\n",
    "        io.save(save_file_directory+pdb_entry[:-5]+'_CCbiolunit'+pdb_entry[-1:]+'.pdb', TyrSelect())\n",
    "    else:\n",
    "        print(pdb_entry)\n",
    "        pass"
   ]
  }
 ],
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