diff --git a/src/identity/processor.rs b/src/identity/processor.rs
index 55123429..9f5a8cca 100644
--- a/src/identity/processor.rs
+++ b/src/identity/processor.rs
@@ -1,4 +1,4 @@
-use std::collections::HashMap;
+use std::collections::{HashMap, VecDeque};
 use std::sync::{Arc, Mutex};
 
 use anyhow::anyhow;
@@ -513,7 +513,7 @@ impl OnChainIdentityProcessor {
 }
 
 pub struct OffChainIdentityProcessor {
-    committed_batches: Arc<Mutex<Vec<BatchEntry>>>,
+    committed_batches: Arc<Mutex<VecDeque<BatchEntry>>>,
     database: Arc<Database>,
 }
 
@@ -529,19 +529,31 @@ impl IdentityProcessor for OffChainIdentityProcessor {
         processed_tree: &TreeVersion<Intermediate>,
         mined_tree: &TreeVersion<Canonical>,
     ) -> anyhow::Result<()> {
-        let batches = {
-            let mut committed_batches = self.committed_batches.lock().unwrap();
-            let copied = committed_batches.clone();
-            committed_batches.clear();
-            copied
-        };
-
-        for batch in batches.iter() {
+        loop {
+            let batch = {
+                let mut committed_batches = self.committed_batches.lock().unwrap();
+                committed_batches.pop_front()
+            };
+
+            let Some(batch) = batch else {
+                return Ok(());
+            };
+
             let mut tx = self
                 .database
                 .begin_tx(IsolationLevel::ReadCommitted)
                 .await?;
 
+            let root_state = tx.get_root_state(&batch.next_root).await?;
+            if root_state.is_none() {
+                // If root is not in identities table we can't mark it as processed or mined.
+                // It happens sometimes as we do not have atomic operation for database and tree
+                // insertion.
+                // TODO: check if this is still possible after HA being done
+                tx.commit().await?;
+                return Ok(());
+            }
+
             tx.mark_root_as_processed(&batch.next_root).await?;
             tx.mark_root_as_mined(&batch.next_root).await?;
 
@@ -550,8 +562,6 @@ impl IdentityProcessor for OffChainIdentityProcessor {
             processed_tree.apply_updates_up_to(batch.next_root);
             mined_tree.apply_updates_up_to(batch.next_root);
         }
-
-        Ok(())
     }
 
     async fn await_clean_slate(&self) -> anyhow::Result<()> {
@@ -609,6 +619,6 @@ impl OffChainIdentityProcessor {
     fn add_batch(&self, batch_entry: BatchEntry) {
         let mut committed_batches = self.committed_batches.lock().unwrap();
 
-        committed_batches.push(batch_entry);
+        committed_batches.push_back(batch_entry);
     }
 }