spec2nii anon to also act on a JSON sidecar

[schorschinho]

Hi Will,

I'm tinkering with BIDS-ifying a pretty large dataset with BIDScoin. Currently, I need to run spec2nii anon and spec2nii extract separately after the conversion to remove PHI from the JSON sidecar. (Need to submit a separate issue in the BIDScoin repository because the anon option doesn't seem to get picked up correctly)

Would it be possible to allow the anon option to be passed at conversion time so that spec2nii generates de-identified nii and JSON files right away? dcm2niix allows something like this with the -ba argument (see https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#General_Usage).

Thanks :)
Georg

[wtclarke]

This should be fixed in PR #113 . I'll let you know when it's out.