From fbf35d972b7ec1162a264ade95a2c0cec129c3a6 Mon Sep 17 00:00:00 2001 From: Anurag Priyam Date: Fri, 20 Feb 2015 00:13:41 +0530 Subject: [PATCH] Update README for gem release. One-two other updates concerning change of approach. Signed-off-by: Anurag Priyam --- README.mkd | 26 +++++++++++++++----------- 1 file changed, 15 insertions(+), 11 deletions(-) diff --git a/README.mkd b/README.mkd index 83816aa..f9f3500 100644 --- a/README.mkd +++ b/README.mkd @@ -66,7 +66,7 @@ Minimalist example: ```shell Yannick@n56-169 ~/g/oswitch> uname -a Darwin n56-169.sbcs.qmul.ac.uk 14.0.0 Darwin Kernel Version 14.0.0: Fri Sep 19 00:26:44 PDT 2014; root:xnu-2782.1.97~2/RELEASE_X86_64 x86_64 -Yannick@n56-169 ~/g/oswitch> bundle exec bin/oswitch biolinux_8 +Yannick@n56-169 ~/g/oswitch> oswitch yeban/biolinux:8 ### You are now running: biolinux_8, in container: biolinux_8-27182. ### Yannick@biolinux_8-27182 ~/g/oswitch> uname -a Linux biolinux_8-27182 3.16.4-tinycore64 #1 SMP Thu Oct 23 16:14:24 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux @@ -209,18 +209,15 @@ The following should give an encouraging message: $ docker run hello-world -#### Install OSwitch +#### Install oswitch - $ git clone https://github.com/yeban/oswitch - $ cd oswitch - $ gem install bundler && bundle - $ bundle exec bin/oswitch biolinux +Requirements: Ruby 2.0 or higher. + + $ gem install oswitch -Obtaining BioLinux can take a long time (e.g. up to 20 minutes on a fast new -macbook with a university gigabit connection). You may quickly want to test oswitch's feature -set using Ubuntu. +#### Testing oswitch - $ bundle exec bin/oswitch ubuntu:14.04 + $ oswitch ubuntu:14.04 ## FAQ @@ -264,7 +261,7 @@ repository, please include the Dockerfile as well. 1. ~~make it possible to use docker containers without inheriting our current baseimage~~ -2. gem distribution for easier installation +2. ~~gem distribution for easier installation~~ 3. brew recipe for Mac 4. test on QMUL's compute cluster 5. create an SELinux policy to run oswitch on CentOS without having to disable @@ -273,6 +270,13 @@ SELinux entirely 7. make available images for common bioinformatics software 8. deploy at [RAL/JASMIN](http://www.jasmin.ac.uk) +## Contribute + + $ git clone https://github.com/yeban/oswitch + $ cd oswitch + $ gem install bundler && bundle + $ bundle exec bin/oswitch biolinux + ## Contributors & Funding * Anurag Priyam - [a.priyam@qmul.ac.uk](mailto:a.priyam@qmul.ac.uk) | [@yeban](//twitter.com/yeban)