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Feature request: allow downloading from GSA #13
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Hi, Interesting feature request. I'm not very familiar with GSA, though, and couldn't find any (English) documentation that gives a guide as to how to interact programmatically. Implementing this in kingfisher would require some way to:
Any ideas? How did you know how to construct your example aspera command line? |
Yes, there is indeed a problem of documentation there. I was only able to construct this command after consulting with the GSA support team. I should say that they were pretty quick and helpful. They can be contacted at: gsa@big.ac.cn |
Thanks. I've contacted them. |
Since there are data deposited in GSA but not in SRA/ENA, it would be useful to add the option to download from GSA.
I was able to use Aspera for downloading from GSA using a command like:
./ascp -i [/path/to/the/key/file] -P33001 -QT -l100m -k1 aspera01@download.big.ac.cn:/gsa3/<data set ID>/<run ID> [/path/to/your/local/directory/]
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